PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G041300.1.p
Common NameGLYMA_11G041300, LOC100784905
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARR-B
Protein Properties Length: 571aa    MW: 63668.9 Da    PI: 6.8168
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G041300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.37.3e-28313367156
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                          k +++WtpeLH++Fv+aveqL G+++A+P++ile+mkv+gLt+++v+SHLQkYR++
  Glyma.11G041300.1.p 313 KVKVDWTPELHKKFVKAVEQL-GIDQAIPSRILEIMKVEGLTRHNVASHLQKYRIH 367
                          5689*****************.********************************86 PP
2Response_reg28.76.6e-11201261109
                          EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTT.SEHHHHHHHHHHHTTTSEEEEEESTTTHHHHH CS
         Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempg.mdGlellkeireeepklpiivvtahgeeedal 87 
                          vl+ + + + +  +r+ le  +y +v ++ d  eal  l  +   +++ ++ ++ +  + G+++l++     ++lp i+ +  +  +++ 
  Glyma.11G041300.1.p  20 VLLLEGDSSSAAEIREQLEAMDY-KVSTFYDENEALSALSSSPkgFHVAIVEVSTSCsLGGFKFLENA----KDLPTIMTSKDQCLNTMM 104
                          67777888889999*********.***************888878********999988999998753....4689999999999***** PP

                          HHHHTTESEEEESS--HHHHHH CS
         Response_reg  88 ealkaGakdflsKpfdpeelvk 109
                          +++ +Ga +flsKp ++++l +
  Glyma.11G041300.1.p 105 KCIALGAVEFLSKPLSEDKLKN 126
                          ******************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.71E-1516140IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23005.3E-1716139No hitNo description
SMARTSM004480.003318128IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011020.31119132IPR001789Signal transduction response regulator, receiver domain
PfamPF000727.8E-820126IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.37E-921131No hitNo description
PROSITE profilePS5129416.916310369IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.6E-27311370IPR009057Homeodomain-like
SuperFamilySSF466895.11E-18312369IPR009057Homeodomain-like
TIGRFAMsTIGR015572.8E-25313368IPR006447Myb domain, plants
PfamPF002491.4E-7316365IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 571 aa     Download sequence    Send to blast
MVCTANDLQG WKDFPKGLRV LLLEGDSSSA AEIREQLEAM DYKVSTFYDE NEALSALSSS  60
PKGFHVAIVE VSTSCSLGGF KFLENAKDLP TIMTSKDQCL NTMMKCIALG AVEFLSKPLS  120
EDKLKNIWQH VVHKAFNSGE NVLSESLKPV KESVESMLQL QTDIGQDKSR ISIDLENVSR  180
FSDNDHEQSA VCDKYPAPST PQLKQGTRLL DDGDCHEQTN CSTEKESGEH DRECKSVETS  240
CGNLNAESSP QPREPDKTLI REEDDFANVS KGESAVSLNP HNKKFLSNAD GNTSPNKTGV  300
LNDSCEIKAN RKKVKVDWTP ELHKKFVKAV EQLGIDQAIP SRILEIMKVE GLTRHNVASH  360
LQKYRIHKRQ SAPREEDRKW HNQGDAMQRN YYMQRPIMAY PPYHSHHTLS PAPIYPMWGQ  420
PGSQTAGVQI WGHPGYPMWH PTESWHWKPY PGVHVDAWGC PLVPPPQAPC FPYNQNTPGL  480
HNPKAVDYRF SMPRSSFEHH PAEEVVDKVV KEAMSQPWLP LPLGLKPPSM DSVLAELSKQ  540
GIPSIPLGNK GSSTPKPRRD VRPTPPPGPT *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A2e-16318367655Transcription factor LUX
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.319010.0flower| root
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.11G041300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150431e-139AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003538769.10.0two-component response regulator-like APRR2 isoform X1
RefseqXP_006590602.10.0two-component response regulator-like APRR2 isoform X1
RefseqXP_014619307.10.0two-component response regulator-like APRR2 isoform X1
RefseqXP_028188736.10.0two-component response regulator-like APRR2 isoform X1
RefseqXP_028188737.10.0two-component response regulator-like APRR2 isoform X1
RefseqXP_028188738.10.0two-component response regulator-like APRR2 isoform X1
SwissprotQ6LA431e-140APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBLA0A445HWW70.0A0A445HWW7_GLYSO; Two-component response regulator-like APRR2 isoform A
TrEMBLK7LMZ70.0K7LMZ7_SOYBN; Uncharacterized protein
STRINGGLYMA11G04441.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35663465
Representative plantOGRP9166813
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.61e-137ARR-B family protein
Publications ? help Back to Top
  1. Gong L, et al.
    Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions.
    PLoS ONE, 2015. 10(5): p. e0128041
    [PMID:26010543]