PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

ERF

Protein Properties

Length: 198aa MW: 21978.6 Da PI: 5.9678

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.11G035100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	57.8	2.7e-18	43	92	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr +k +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++ a++ ++g Glyma.11G035100.1.p 43 TYRGVRMRK-WGKWVSEIREPKK---KSRIWLGSFSTPEMAARAHDVAALTIKG 92 69***99.******854...6********************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	5.9E-12	43	92	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	4.7E-31	43	101	IPR001471	AP2/ERF domain
SMART	SM00380	2.7E-37	43	106	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.81E-21	43	101	IPR016177	DNA-binding domain
PROSITE profile	PS51032	22.827	43	100	IPR001471	AP2/ERF domain
PRINTS	PR00367	5.7E-10	44	55	IPR001471	AP2/ERF domain
CDD	cd00018	3.09E-32	44	102	No hit	No description
PRINTS	PR00367	5.7E-10	66	82	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
MEEEDNQVHN LTEEKKKSEN EEVSVESNDK KKKKRSSDGK HPTYRGVRMR KWGKWVSEIR 60 EPKKKSRIWL GSFSTPEMAA RAHDVAALTI KGTSAFLNFP ELASHLPRPL TTSPKDIQAA 120 AAKAAALNFE AQVEAQAQAQ LSIPSSSSEV EFPDLLLDSS HSAGEFDYSA PWLVAEAEHL 180 DLAFRLDDPP FPAWGSY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	2e-17	35	100	6	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	14	34	KKKSENEEVSVESNDKKKKKR

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.11G035100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015043	2e-77	AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003538748.1	1e-143	dehydration-responsive element-binding protein 3
Refseq	XP_028187101.1	1e-143	dehydration-responsive element-binding protein 3-like
Swissprot	Q9LYD3	5e-49	DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBL	A0A445HWL0	1e-141	A0A445HWL0_GLYSO; Dehydration-responsive element-binding protein 3
TrEMBL	I1LGS4	1e-141	I1LGS4_SOYBN; Uncharacterized protein
STRING	GLYMA11G03790.1	1e-142	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF192	34	263
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44940.1	3e-45	ERF family protein

Link Out ? help Back to Top
Phytozome	Glyma.11G035100.1.p
Entrez Gene	100817503

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Galuschka C,Schindler M,Bülow L,Hehl R AthaMap web tools for the analysis and identification of co-regulated genes. Nucleic Acids Res., 2007. 35(Database issue): p. D857-62 [PMID:17148485]