PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

MYB

Protein Properties

Length: 184aa MW: 20915.7 Da PI: 9.3068

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.11G034900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	62.8	7.1e-20	16	63	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd++l+++++ +G + Wkt+a + g++R++k+c++rw++yl Glyma.11G034900.1.p 16 RGAWTAEEDQKLAQCIEIHGAKKWKTVAIKSGLNRCGKSCRLRWLNYL 63 89********************************************97 PP
2	Myb_DNA-binding	54	3.8e-17	69	113	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ + eE++l+++++k+lG++ W++Ia++++ gRt++++k++w++ Glyma.11G034900.1.p 69 RGNISVEEEDLIIRLHKLLGNR-WSLIAKRLP-GRTDNEIKNYWNTC 113 78999***************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	18.677	11	63	IPR017930	Myb domain
SuperFamily	SSF46689	4.49E-30	15	110	IPR009057	Homeodomain-like
SMART	SM00717	1.4E-15	15	65	IPR001005	SANT/Myb domain
Pfam	PF00249	1.5E-17	16	63	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.0E-23	17	70	IPR009057	Homeodomain-like
CDD	cd00167	1.28E-10	18	63	No hit	No description
PROSITE profile	PS51294	25.515	64	118	IPR017930	Myb domain
SMART	SM00717	9.4E-15	68	116	IPR001005	SANT/Myb domain
Pfam	PF00249	1.0E-15	69	113	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.4E-25	71	118	IPR009057	Homeodomain-like
CDD	cd00167	3.24E-11	73	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence Send to blast
MAPPRNVETA KKTNNRGAWT AEEDQKLAQC IEIHGAKKWK TVAIKSGLNR CGKSCRLRWL 60 NYLRPNIKRG NISVEEEDLI IRLHKLLGNR WSLIAKRLPG RTDNEIKNYW NTCLCKKVNH 120 KKVKPETSTA QTTHTTQNTE ERAAVENKEG TDDGSGDSEV NFDVNEFFNF SIESGPFALD 180 WMI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	2e-29	16	119	7	109	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Controls the expression of genes involved in anthocyanin biosynthesis. Regulates the expression of at least 3 structural genes: chalcone synthase, dihydroflavonol reductase and flavonol O(3) glucosyltransferase. C1 acts as a trans-acting factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.11G034900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015043	2e-74	AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003538747.1	1e-134	transcription factor MYB114
Refseq	XP_028187062.1	1e-134	transcription factor MYB114-like
Swissprot	P10290	1e-50	MYBC_MAIZE; Anthocyanin regulatory C1 protein
TrEMBL	A0A445HWH1	1e-133	A0A445HWH1_GLYSO; Anthocyanin regulatory C1 protein
TrEMBL	K7LMV7	1e-133	K7LMV7_SOYBN; Uncharacterized protein
STRING	GLYMA11G03770.2	1e-134	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2148	32	88
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G14750.1	4e-50	myb domain protein 66

Link Out ? help Back to Top
Phytozome	Glyma.11G034900.1.p
Entrez Gene	100816449

Publications ? help Back to Top
Chen B,Wang X,Hu Y,Wang Y,Lin Z Ectopic expression of a c1-I allele from maize inhibits pigment formation in the flower of transgenic tobacco. Mol. Biotechnol., 2004. 26(3): p. 187-92 [PMID:15004287] Paz-Ares J,Ghosal D,Saedler H Molecular analysis of the C1-I allele from Zea mays: a dominant mutant of the regulatory C1 locus. EMBO J., 1990. 9(2): p. 315-21 [PMID:2303027] Cone KC,Burr FA,Burr B Molecular analysis of the maize anthocyanin regulatory locus C1. Proc. Natl. Acad. Sci. U.S.A., 1986. 83(24): p. 9631-5 [PMID:3025847] Paz-Ares J,Ghosal D,Wienand U,Peterson PA,Saedler H The regulatory c1 locus of Zea mays encodes a protein with homology to myb proto-oncogene products and with structural similarities to transcriptional activators. EMBO J., 1987. 6(12): p. 3553-8 [PMID:3428265] Scheffler B, et al. Molecular analysis of C1 alleles in Zea mays defines regions involved in the expression of this regulatory gene. Mol. Gen. Genet., 1994. 242(1): p. 40-8 [PMID:7904044] Franken P,Schrell S,Peterson PA,Saedler H,Wienand U Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38. Plant J., 1994. 6(1): p. 21-30 [PMID:7920701] Singer T,Gierl A,Peterson PA Three new dominant C1 suppressor alleles in Zea mays. Genet. Res., 1998. 71(2): p. 127-32 [PMID:9717435]