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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Glyma.11G033100.1.p |
| Common Name | GLYMA_11G033100, LOC100811637 |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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| Family |
C2H2 |
| Protein Properties |
Length: 289aa MW: 31837.6 Da PI: 8.3388 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.11G033100.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 12.5 | 0.00045 | 4 | 26 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+kC+ C+++Fs+ L H++ H
Glyma.11G033100.1.p 4 HKCKLCSRTFSNGRALGGHMKAH 26
79******************998 PP
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| 2 | zf-C2H2 | 12.6 | 0.00041 | 194 | 216 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+kC+ Cgk+F+++ L H + +
Glyma.11G033100.1.p 194 HKCQSCGKTFRSSRALGGHRSIC 216
79***********9998888765 PP
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| 3 | zf-C2H2 | 12.5 | 0.00046 | 226 | 248 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++Cp C+k+F + L H r+H
Glyma.11G033100.1.p 226 FQCPFCSKVFGSGQALGGHKRSH 248
89**************9999999 PP
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| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SuperFamily | SSF57667 | 5.37E-5 | 3 | 29 | No hit | No description |
| Pfam | PF13912 | 8.9E-8 | 3 | 27 | IPR007087 | Zinc finger, C2H2 |
| PROSITE profile | PS50157 | 10.907 | 4 | 31 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 0.024 | 4 | 26 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE pattern | PS00028 | 0 | 6 | 26 | IPR007087 | Zinc finger, C2H2 |
| Gene3D | G3DSA:3.30.40.10 | 4.0E-4 | 176 | 237 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
| SuperFamily | SSF57667 | 2.12E-8 | 194 | 248 | No hit | No description |
| SMART | SM00355 | 67 | 194 | 214 | IPR015880 | Zinc finger, C2H2-like |
| Pfam | PF13912 | 3.1E-5 | 194 | 213 | IPR007087 | Zinc finger, C2H2 |
| PROSITE profile | PS50157 | 8.974 | 194 | 223 | IPR007087 | Zinc finger, C2H2 |
| Pfam | PF13912 | 4.8E-11 | 225 | 248 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 0.013 | 226 | 248 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE profile | PS50157 | 10.076 | 226 | 253 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 228 | 248 | IPR007087 | Zinc finger, C2H2 |
| Sequence ? help Back to Top |
| Protein Sequence Length: 289 aa
Download sequence Send
to blast |
MERHKCKLCS RTFSNGRALG GHMKAHLATL PLPPKPPLSP SAASFSSNSS SEEATHDEKS 60
LIYGLRENPK KCFRLADPEF NMASVVQDRE SETESKNPTR RRSERTRRTV NSELKKAKLS 120
FMESPEPVSS VSDTSPEEDV AMCLMMLSRD RWSKNNNNNI IIINNVVSND DVVEEEEEGG 180
RSVEIKLRRV RGKHKCQSCG KTFRSSRALG GHRSICEGSG NDSKTFQCPF CSKVFGSGQA 240
LGGHKRSHLM PSSSSTANND SFRLKESFID LNLPAPAEDD DLSVVSDA*
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| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | KC967123 | 1e-168 | KC967123.1 Glycine max C2H2-type zinc finger protein 1 (ZFP1) mRNA, complete cds. |
