PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.11G022200.1.p | ||||||||
Common Name | GLYMA_11G022200, LOC100803088 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | TALE | ||||||||
Protein Properties | Length: 643aa MW: 71668.7 Da PI: 6.3819 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 25.1 | 3.1e-08 | 418 | 455 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps ++ LA+++gL+ qV++WF N R + Glyma.11G022200.1.p 418 FEHflHPYPSDVDKHILARQTGLSRGQVSNWFINARVR 455 554459******************************88 PP | |||||||
2 | BELL | 117.3 | 7.4e-38 | 280 | 350 | 2 | 72 |
BELL 2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 + elqk+k+kLls+leeVd+rYk+y++q++ v+ssFeavag g+a++Y +lAlka+SrhFrcLkd i +qi Glyma.11G022200.1.p 280 FVELQKRKTKLLSMLEEVDRRYKHYRNQMKSVVSSFEAVAGNGAATVYSALALKAMSRHFRCLKDGILSQI 350 679******************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 4.8E-54 | 216 | 348 | IPR006563 | POX domain |
Pfam | PF07526 | 2.4E-45 | 222 | 346 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 11.758 | 396 | 459 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.09E-11 | 399 | 460 | No hit | No description |
SMART | SM00389 | 1.4E-8 | 399 | 463 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.07E-16 | 400 | 466 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.6E-27 | 402 | 465 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 4.3E-17 | 416 | 455 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0009506 | Cellular Component | plasmodesma | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 643 aa Download sequence Send to blast |
MARQVCDDKL STGFCYSDVS SGNPTMLVNQ IQGFVSDPEM YNLTTGMEMI GFPKSDTNAV 60 MWRSFIPEPG PSSSKTINDS STTFYHHDYN NKNADFTPAG NISETSAENL IVGNHDSAPW 120 QDNDYNRFDD SSLRCVFPCE TNERPSQGLS LSLSSTNPST IGLQSFELRQ TGHHPDFVSS 180 SSREGFFGKP VSLQQQQMLS QDGYVSSNSK VASVYQQGHF LVKNSKFLVP AQDLLNEFCS 240 LCAKQSDLGK PTKSLKKQWE DQENNGVGSS KKHSLTSLEF VELQKRKTKL LSMLEEVDRR 300 YKHYRNQMKS VVSSFEAVAG NGAATVYSAL ALKAMSRHFR CLKDGILSQI QATRKAMGEK 360 DPVAPGTTRG ETPRLKVIDQ TLRQQRAFQQ MSMMETHPWR PQRGLPERAV SVLRAWLFEH 420 FLHPYPSDVD KHILARQTGL SRGQVSNWFI NARVRLWKPM VEEMYLEEVK DPENNIASSE 480 GATDQDNDIN PNNVQYPPPP LSSRSEDQKP SLVRIDSECA SSIINNHSTP DNKNDPKGQE 540 QCFGSVELDF SSYTHHSSGM VSYGSSDQNG NNNQSGVSLT LGLQQHGVSL AFPPATQSSL 600 YYPRDQIEDC QPVHQYSLLD GEGQNLPYRN LMGAQLLHDL AG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrm_A | 1e-15 | 405 | 463 | 5 | 63 | Homeobox protein Meis2 |
4xrm_B | 1e-15 | 405 | 463 | 5 | 63 | Homeobox protein Meis2 |
4xrs_A | 1e-15 | 405 | 462 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 1e-15 | 405 | 462 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.28076 | 0.0 | cotyledon| leaf| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Early expression is detected in the inflorescence apex of developing flowers and also in the ovule primordium and the integuments. {ECO:0000269|PubMed:8521490}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in both floral and vegetative tissues. {ECO:0000269|PubMed:8521490}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269|PubMed:12244239, ECO:0000269|PubMed:17693535, ECO:0000269|PubMed:22786869}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.11G022200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 0.0 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003538310.1 | 0.0 | homeobox protein BEL1 homolog | ||||
Refseq | XP_006590505.1 | 0.0 | homeobox protein BEL1 homolog | ||||
Swissprot | Q38897 | 1e-137 | BEL1_ARATH; Homeobox protein BEL1 homolog | ||||
TrEMBL | I1LGE2 | 0.0 | I1LGE2_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA11G02450.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4650 | 20 | 30 | Representative plant | OGRP133 | 16 | 172 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41410.1 | 1e-137 | TALE family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.11G022200.1.p |
Entrez Gene | 100803088 |
Publications ? help Back to Top | |||
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