PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

TALE

Protein Properties

Length: 643aa MW: 71668.7 Da PI: 6.3819

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.11G022200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	25.1	3.1e-08	418	455	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps ++ LA+++gL+ qV++WF N R + Glyma.11G022200.1.p 418 FEHflHPYPSDVDKHILARQTGLSRGQVSNWFINARVR 455 554459******************************88 PP
2	BELL	117.3	7.4e-38	280	350	2	72
BELL 2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 + elqk+k+kLls+leeVd+rYk+y++q++ v+ssFeavag g+a++Y +lAlka+SrhFrcLkd i +qi Glyma.11G022200.1.p 280 FVELQKRKTKLLSMLEEVDRRYKHYRNQMKSVVSSFEAVAGNGAATVYSALALKAMSRHFRCLKDGILSQI 350 679******************************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	4.8E-54	216	348	IPR006563	POX domain
Pfam	PF07526	2.4E-45	222	346	IPR006563	POX domain
PROSITE profile	PS50071	11.758	396	459	IPR001356	Homeobox domain
CDD	cd00086	3.09E-11	399	460	No hit	No description
SMART	SM00389	1.4E-8	399	463	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.07E-16	400	466	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.6E-27	402	465	IPR009057	Homeodomain-like
Pfam	PF05920	4.3E-17	416	455	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0048481	Biological Process	plant ovule development
GO:0005634	Cellular Component	nucleus
GO:0005829	Cellular Component	cytosol
GO:0009506	Cellular Component	plasmodesma
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 643 aa Download sequence Send to blast
MARQVCDDKL STGFCYSDVS SGNPTMLVNQ IQGFVSDPEM YNLTTGMEMI GFPKSDTNAV 60 MWRSFIPEPG PSSSKTINDS STTFYHHDYN NKNADFTPAG NISETSAENL IVGNHDSAPW 120 QDNDYNRFDD SSLRCVFPCE TNERPSQGLS LSLSSTNPST IGLQSFELRQ TGHHPDFVSS 180 SSREGFFGKP VSLQQQQMLS QDGYVSSNSK VASVYQQGHF LVKNSKFLVP AQDLLNEFCS 240 LCAKQSDLGK PTKSLKKQWE DQENNGVGSS KKHSLTSLEF VELQKRKTKL LSMLEEVDRR 300 YKHYRNQMKS VVSSFEAVAG NGAATVYSAL ALKAMSRHFR CLKDGILSQI QATRKAMGEK 360 DPVAPGTTRG ETPRLKVIDQ TLRQQRAFQQ MSMMETHPWR PQRGLPERAV SVLRAWLFEH 420 FLHPYPSDVD KHILARQTGL SRGQVSNWFI NARVRLWKPM VEEMYLEEVK DPENNIASSE 480 GATDQDNDIN PNNVQYPPPP LSSRSEDQKP SLVRIDSECA SSIINNHSTP DNKNDPKGQE 540 QCFGSVELDF SSYTHHSSGM VSYGSSDQNG NNNQSGVSLT LGLQQHGVSL AFPPATQSSL 600 YYPRDQIEDC QPVHQYSLLD GEGQNLPYRN LMGAQLLHDL AG*

Sequence ? help Back to Top

Protein Sequence Length: 643 aa Download sequence Send to blast

MARQVCDDKL STGFCYSDVS SGNPTMLVNQ IQGFVSDPEM YNLTTGMEMI GFPKSDTNAV  60
MWRSFIPEPG PSSSKTINDS STTFYHHDYN NKNADFTPAG NISETSAENL IVGNHDSAPW  120
QDNDYNRFDD SSLRCVFPCE TNERPSQGLS LSLSSTNPST IGLQSFELRQ TGHHPDFVSS  180
SSREGFFGKP VSLQQQQMLS QDGYVSSNSK VASVYQQGHF LVKNSKFLVP AQDLLNEFCS  240
LCAKQSDLGK PTKSLKKQWE DQENNGVGSS KKHSLTSLEF VELQKRKTKL LSMLEEVDRR  300
YKHYRNQMKS VVSSFEAVAG NGAATVYSAL ALKAMSRHFR CLKDGILSQI QATRKAMGEK  360
DPVAPGTTRG ETPRLKVIDQ TLRQQRAFQQ MSMMETHPWR PQRGLPERAV SVLRAWLFEH  420
FLHPYPSDVD KHILARQTGL SRGQVSNWFI NARVRLWKPM VEEMYLEEVK DPENNIASSE  480
GATDQDNDIN PNNVQYPPPP LSSRSEDQKP SLVRIDSECA SSIINNHSTP DNKNDPKGQE  540
QCFGSVELDF SSYTHHSSGM VSYGSSDQNG NNNQSGVSLT LGLQQHGVSL AFPPATQSSL  600
YYPRDQIEDC QPVHQYSLLD GEGQNLPYRN LMGAQLLHDL AG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4xrm_A	1e-15	405	463	5	63	Homeobox protein Meis2
4xrm_B	1e-15	405	463	5	63	Homeobox protein Meis2
4xrs_A	1e-15	405	462	1	58	Homeobox protein Meis1
4xrs_B	1e-15	405	462	1	58	Homeobox protein Meis1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.28076	0.0	cotyledon\| leaf\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Early expression is detected in the inflorescence apex of developing flowers and also in the ovule primordium and the integuments. {ECO:0000269\|PubMed:8521490}.
Uniprot	TISSUE SPECIFICITY: Expressed in both floral and vegetative tissues. {ECO:0000269\|PubMed:8521490}.

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269\|PubMed:12244239, ECO:0000269\|PubMed:17693535, ECO:0000269\|PubMed:22786869}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.11G022200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015043	0.0	AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003538310.1	0.0	homeobox protein BEL1 homolog
Refseq	XP_006590505.1	0.0	homeobox protein BEL1 homolog
Swissprot	Q38897	1e-137	BEL1_ARATH; Homeobox protein BEL1 homolog
TrEMBL	I1LGE2	0.0	I1LGE2_SOYBN; Uncharacterized protein
STRING	GLYMA11G02450.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4650	20	30
Representative plant	OGRP133	16	172

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41410.1	1e-137	TALE family protein

Link Out ? help Back to Top
Phytozome	Glyma.11G022200.1.p
Entrez Gene	100803088

Publications ? help Back to Top
Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules. Development, 2016. 143(3): p. 422-6 [PMID:26700684] Lozano-Sotomayor P, et al. Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana. Plant J., 2016. 88(3): p. 437-451 [PMID:27402171]