PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

ERF

Protein Properties

Length: 326aa MW: 35814.1 Da PI: 8.8961

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.11G018100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	59.9	5.9e-19	136	186	2	56
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvAeIr p + r r++lg+++tae Aa a+++a+ kl+ge Glyma.11G018100.1.p 136 LYRGVRQRH-WGKWVAEIRLPQN---RMRVWLGTYDTAEAAAYAYDRAAYKLRGE 186 59****9.******954...5************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	7.00E-17	135	195	No hit	No description
SMART	SM00380	1.0E-35	136	199	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.301	136	193	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	6.2E-31	136	194	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.63E-22	136	193	IPR016177	DNA-binding domain
PRINTS	PR00367	4.2E-10	137	148	IPR001471	AP2/ERF domain
Pfam	PF00847	3.3E-13	137	186	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.2E-10	159	175	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MEGMRDTKSQ LEIQDQEGTN IGSSLSKLIL ASGSGTNTLD SIFSNCPQTT NGSTSSNSVL 60 DDLEPFRSSG CESLGSSVYL RQRDILQKFY QESRGNGNNN GSYNIPRSLA NTSINSVCRS 120 SSLSCYSLTK PCKKKLYRGV RQRHWGKWVA EIRLPQNRMR VWLGTYDTAE AAAYAYDRAA 180 YKLRGEYARL NFPNLKDPTK LGFGDSARLN ALKSSVDAKI QAICQKVKKE RAKKNATKKK 240 LHDSSGSTDP NGGQKINSSS CSSSSLSQPL SPPSIFYDNW ANDLFSPASV STECQSMETE 300 ELFEGCSLAR LPSFDPELIW EVLAV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	1e-20	135	193	1	60	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.24163	0.0	cotyledon\| leaf

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.11G018100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT031085	0.0	KT031085.1 Glycine max clone HN_CCL_149 AP2-EREBP transcription factor (Glyma11g02050.1) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001304391.2	0.0	AP2-EREBP transcription factor
Refseq	XP_028188602.1	0.0	ethylene-responsive transcription factor ERF061-like
Swissprot	Q9C7W2	1e-63	ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBL	A0A445HVN3	0.0	A0A445HVN3_GLYSO; Ethylene-responsive transcription factor ERF061
TrEMBL	I1LG95	0.0	I1LG95_SOYBN; AP2-EREBP transcription factor
STRING	GLYMA11G02050.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7181	31	48
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64380.1	1e-50	ERF family protein

Link Out ? help Back to Top
Phytozome	Glyma.11G018100.1.p
Entrez Gene	100815913

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chai C, et al. Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance. BMC Genomics, 2015. 16: p. 596 [PMID:26268547]