PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G010900.1.p
Common NameGLYMA_11G010900, LOC100809837
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 949aa    MW: 104085 Da    PI: 4.5449
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G010900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.54e-10795839146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg+W+++E el+++av+++G++ ++ I +t+   +t+ q+k+++ k
  Glyma.11G010900.1.p 795 RGKWSKQETELFYEAVREMGTD-FSVIQKTFFPDKTRHQIKLKYKK 839
                          89********************.*******9889**********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159638.3E-22788857No hitNo description
PROSITE profilePS500906.26790841IPR017877Myb-like domain
SMARTSM007172.4E-8794843IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.0E-8795839IPR009057Homeodomain-like
SuperFamilySSF466891.64E-10796844IPR009057Homeodomain-like
CDDcd001676.44E-7797839No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 949 aa     Download sequence    Send to blast
MDPFDDILPT APAARTRLGA KFIPKAKSKQ FPRKGIPASE HSTSSKDGIL GNECQNAVAS  60
ALSMPAEEPK GSVHHTQVEI PNSEDSTNRK QVSVKGDSAA LVDDSTITAT EVDADQKSMN  120
FLKPICEVTE GDPVYFEGAS VTSFVPETNL NNGTTQPVHP ANAVENEFNV AAPSATCSAI  180
DRMKEQPKIG EGSFLDSNKL IDNSIQVGTD LGFQGSSDDK IAIIQSNFDS KSNFGKKQEG  240
VSAEFELDPF SNILPYPGAG NVHKFKPKIK PRPRVSNVPA IASDSSNVMM EKSVELPTSC  300
TNDFQFFQSC GDGSGGLNQS ASLPLPTSEI LRTTELPDKF DDTSSSILSE DNKSLAAAIP  360
SQLDSLNAML SEDAVHNGTT DWPSSFGKSS REAADIFSGL ESLDDFLTQA ATGTGKPALH  420
SFNGKGGEEN FVTPASSSIN SFGECDTTQV QRCPEYHTPQ DSLTFNEAAV FNEDDIHTSN  480
RRLETEEIVD LNPACPGDDV IDYQSMKSGE DPTLGIPVHE ELTNAADSPT LVDFLHADVT  540
REKEDSNKRK KDGSTSCSLR KNRRCIAGEE DKGAKTSRQL RKQAARKPVN SSLNEDVEDN  600
NDLDPSYNSN GDELQENDDE YEVDYPSRKR RVSNSSQKKP VAKSGKTSQK PKKANDDLEK  660
TEEPPKKFSH STRRRKRCVD KALLEIPEDE LDRLNIPIKD IILLEEHRER LAKKEAMTSN  720
TSSTNQSGGD SLHEAGSYNE GAYDDGAYDD GAYNDEEFLG SEDGRDPYDN QANEGITSTS  780
VLLNYQSFRE KKTPRGKWSK QETELFYEAV REMGTDFSVI QKTFFPDKTR HQIKLKYKKE  840
ERQQPLQLTD AVNNSAKDHP HSKLFIELLK LASTKAEEYP GRDASDLVMA EEVVDLTAGT  900
HEEVPKAATK KEDADVKAQE DSVAVPSPEQ SDDSDDDFQK WSQYKCGY*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.357800.0somatic embryo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.11G010900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150431e-106AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006590446.10.0uncharacterized protein LOC100809837 isoform X3
TrEMBLK7LMF80.0K7LMF8_SOYBN; Uncharacterized protein
STRINGGLYMA11G01285.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36662938
Representative plantOGRP8075913
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.14e-33MYB_related family protein