PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G009800.1.p
Common NameGLYMA_11G009800, LOC100808756
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HSF
Protein Properties Length: 465aa    MW: 52020.3 Da    PI: 5.2229
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G009800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind116.22e-36151072103
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k+y++++d+++++++sw +n+n+fvv++  +f++++Lpk+Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k
  Glyma.11G009800.1.p  15 FLSKTYDMVDDPSTDSVVSWGKNNNTFVVWNVPQFTTDILPKHFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGEK 95 
                          9****************************************************************999.........************* PP

                          XXXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkkse 103
                          +ll++i r+ks+
  Glyma.11G009800.1.p  96 QLLKSISRRKSA 107
                          *********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.6E-5711104IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.31E-3312104IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.0E-3712104IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.4E-191538IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.1E-3015104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-195365IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405478IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-196678IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MEGASRNGSV CVAPFLSKTY DMVDDPSTDS VVSWGKNNNT FVVWNVPQFT TDILPKHFKH  60
NNFSSFVRQL NTYGFRKVDP DRWEFANEGF LRGEKQLLKS ISRRKSAHVN GSQQPSQVHK  120
SAVRACVEVG KFGFEEEVER LKRDKNVLMQ ELVRLRQKQQ GTDNQLKNVG QRVQSMEQRQ  180
QQMMSFLAKA MQSPCFIAQF VQQQNESSKH IPGSNKKRRL QRQEEDSLAT KDLHSSLEGH  240
TVKYQSSINE AAKALFLQIL QINNSTTQSS IKSPDVFLID DVPSAIASDS SSSSTQVSNV  300
MVPPISELTS MEVGSQFPLN CMPSNISELQ SSPAVLGFCR NQGMETESSL LNHDLNVMGA  360
DTRNMGEIDM MSTVLDEADE ANHFSPDTDG ISKLPEISDE FWELLLRPSP LTEGTEETKC  420
SSLGCGLTDD QGLPSEMENK QENFDKILHV DHLTQQMGLH ALDY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-24310417129Heat shock factor protein 1
5d5v_B2e-24310417129Heat shock factor protein 1
5d5v_D2e-24310417129Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.227690.0cotyledon| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.11G009800.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003538654.10.0heat stress transcription factor A-1b
RefseqXP_028191252.10.0heat stress transcription factor A-1b-like
SwissprotQ84T611e-130HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBLA0A445HVC70.0A0A445HVC7_GLYSO; Heat stress transcription factor A-1
TrEMBLI1LFY60.0I1LFY6_SOYBN; Uncharacterized protein
STRINGGLYMA11G01190.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18433169
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.21e-105heat shock factor 3
Publications ? help Back to Top
  1. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]