PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

MYB

Protein Properties

Length: 294aa MW: 33161.1 Da PI: 6.7447

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.11G009400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59.7	6.3e-19	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd++lvd ++++G g+W++ +r g++R++k+c++rw +yl Glyma.11G009400.1.p 15 KGPWSPEEDKILVDFIEKHGHGSWRALPRLAGLNRCGKSCRLRWTNYL 62 79********************************************97 PP
2	Myb_DNA-binding	51.7	2.1e-16	68	113	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ eE++l+++++ lG++ W++Ia++++ gRt++++k+ w+++l Glyma.11G009400.1.p 68 RGKFSDEEEQLIINLHSVLGNK-WAAIASHLP-GRTDNEIKNLWNTHL 113 89******************.*****.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.473	10	62	IPR017930	Myb domain
SuperFamily	SSF46689	1.26E-31	12	109	IPR009057	Homeodomain-like
SMART	SM00717	2.4E-15	14	64	IPR001005	SANT/Myb domain
Pfam	PF00249	5.3E-17	15	62	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.8E-24	16	69	IPR009057	Homeodomain-like
CDD	cd00167	5.73E-12	17	62	No hit	No description
PROSITE profile	PS51294	26.35	63	117	IPR017930	Myb domain
SMART	SM00717	5.8E-15	67	115	IPR001005	SANT/Myb domain
Pfam	PF00249	2.6E-15	68	113	IPR001005	SANT/Myb domain
CDD	cd00167	3.46E-11	70	113	No hit	No description
Gene3D	G3DSA:1.10.10.60	6.2E-27	70	118	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MMRTPISSDE SGLKKGPWSP EEDKILVDFI EKHGHGSWRA LPRLAGLNRC GKSCRLRWTN 60 YLRPDIKRGK FSDEEEQLII NLHSVLGNKW AAIASHLPGR TDNEIKNLWN THLKKKLMQM 120 GLDPVTHRPR THHLNLLSNL QQILALIRLQ SDANKLQLLQ NIFEASNSDP LPDSSYSLLN 180 DVLGGLNNLH SNDLHNLYDG NSLSVQNFDQ NLNGGRNAEP SPSSNSLPNL VSASPDRSPV 240 VKEAQNILVN SKDFSTSAFE LTWGDFMDEE ETNQTYWKGF MDQHSNQTWS TFP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	1e-28	13	117	5	108	B-MYB
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Highly expressed in roots and at lower levels in stems, flowers and siliques. {ECO:0000269\|PubMed:24902892}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250\|UniProtKB:Q9M2D9}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.11G009400.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by gravity in roots. {ECO:0000269\|PubMed:24902892}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015043	4e-82	AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003538653.3	0.0	transcription factor MYB92
Refseq	XP_028188999.1	0.0	transcription factor MYB92-like
Swissprot	Q9SBF3	1e-79	MYB92_ARATH; Transcription factor MYB92
TrEMBL	A0A445HV90	0.0	A0A445HV90_GLYSO; Transcription factor MYB92
TrEMBL	I1LFY0	0.0	I1LFY0_SOYBN; Uncharacterized protein
STRING	GLYMA11G01150.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF402	34	172
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16770.2	1e-80	myb domain protein 9

Link Out ? help Back to Top
Phytozome	Glyma.11G009400.1.p
Entrez Gene	100808232

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]