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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.11G006900.1.p | ||||||||
Common Name | GLYMA_11G006900, LOC100815907 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | CPP | ||||||||
Protein Properties | Length: 775aa MW: 84812.1 Da PI: 6.8185 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 51 | 2.9e-16 | 485 | 522 | 3 | 40 |
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 +k+CnCkkskClk+YCeCfaag++C e C+C+dC+Nk Glyma.11G006900.1.p 485 CKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQDCFNKP 522 89**********************************96 PP | |||||||
2 | TCR | 50.6 | 3.9e-16 | 569 | 607 | 1 | 39 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN Glyma.11G006900.1.p 569 RHKRGCNCKKSSCLKKYCECYQGGVGCSISCRCEGCKNA 607 589***********************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 2.3E-18 | 483 | 524 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 37.11 | 484 | 609 | IPR005172 | CRC domain |
Pfam | PF03638 | 1.1E-11 | 486 | 521 | IPR005172 | CRC domain |
SMART | SM01114 | 4.4E-17 | 569 | 610 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.2E-11 | 571 | 607 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 775 aa Download sequence Send to blast |
MDTPERNQIT ATLSMFEDSP VFNYINSLSP IKPVKSVPIS QTFNSLSFSS PPSVFTSPHV 60 SCLKESRFLR RHNPLGTSKP KVSSEDVIKV HSSEETLADT TRAHHNSSKL QEENTGKGIS 120 LRDASLELSR EHIRFSDELP KALKYNCGSP GYDHPPCGDE ANSLLELPGE AAENVGYVQE 180 GCKTDSVEGE VHLQEICQME PKSEGPDCYW DSLIPDAPDM LIFNSPGEAE AFKGLMHKPL 240 DSSIRLSKFM SMLPHSTINN GRKMHIVDSV ASGSAHEIED NHSEPMTATG TSQTQDNLAD 300 VALVTSNSNE KANDQLVSVT HRTIRRRCLD FEMANVQRKN SDDNSNIGFS TSESDERNVA 360 NEKQLLPAKR NGNLQRGILQ GIGLHLNALA ALKEYNGTQV EKLSSGRQLS LPSSTSLQIT 420 TSQEHQHLSL VPVSSERELD PSDIGVHPAE DCSQPSAYMA GEDFNQNSPR MKRRKSETPG 480 DTEGCKRCNC KKSKCLKLYC ECFAAGVYCI EPCSCQDCFN KPIHEDTVLQ TRKQIESRNP 540 LAFAPKVIRN SDSVPEIGDD PNKTPASARH KRGCNCKKSS CLKKYCECYQ GGVGCSISCR 600 CEGCKNAFGR KDGSAPVGIE TDPEETEASD KGMVEKTLQK TEIQNTENHP DSATVSTPLR 660 LSRPLLPLPF SSKGKPPRSF VTTISGSALF ANQKLGKPNP LWSQAKHFQT VPDEEMPDIL 720 RGDSSPITCI KTSSPNGKRI SSPNCDLGLS PSRRGGRKLI LQSIPSFPSL TPHP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 3e-17 | 488 | 606 | 14 | 120 | Protein lin-54 homolog |
5fd3_B | 3e-17 | 488 | 606 | 14 | 120 | Protein lin-54 homolog |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.23138 | 0.0 | hypocotyl| pod| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.11G006900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003537578.1 | 0.0 | protein tesmin/TSO1-like CXC 2 | ||||
Refseq | XP_028191488.1 | 0.0 | protein tesmin/TSO1-like CXC 2 | ||||
TrEMBL | A0A445HV79 | 0.0 | A0A445HV79_GLYSO; Protein tesmin/TSO1-like CXC 2 | ||||
TrEMBL | K7LMD8 | 0.0 | K7LMD8_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA11G00920.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2619 | 33 | 75 |
Representative plant | OGRP993 | 17 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14770.1 | 1e-141 | TESMIN/TSO1-like CXC 2 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.11G006900.1.p |
Entrez Gene | 100815907 |