PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G276100.2.p
Common NameGLYMA_10G276100
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bZIP
Protein Properties Length: 366aa    MW: 41078.2 Da    PI: 6.5162
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G276100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.15e-1076116340
                          XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHH CS
               bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLea 40 
                          + k  rr+++NReAAr+sR+RKka++++Le+   + ++Le+
  Glyma.10G276100.2.p  76 DQKTVRRLAQNREAARKSRLRKKAYVQQLETsrvRLAQLEQ 116
                          568889***********************973224444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.8E-674137IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.26676120IPR004827Basic-leucine zipper domain
PfamPF001703.8E-777117IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1705.7E-878122No hitNo description
SuperFamilySSF579598.84E-778121No hitNo description
PROSITE patternPS0003608196IPR004827Basic-leucine zipper domain
PfamPF141446.3E-30163237IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MFQRGTNSAT TVSMGNRHVE NWAEDSQHTE DTCTDIDTDD KNQCFSTVSW CNGVGDGALV  60
VVDSQDQSKT KVKAEDQKTV RRLAQNREAA RKSRLRKKAY VQQLETSRVR LAQLEQELQR  120
ARQQGAFIAT GNQGDRSHSA VGNGALAFDM DYARWFDEHQ RLINDIRSAI NSQMDENELH  180
LLVDGVMAHY DELFRLKSIG AKADVFHILS GMWKTPAERC FIWLGGFRSS ELLKIVRNQL  240
EPLTEQQLMG IYNLQQSSQQ AEDALSQGMD ALQQSLSETL SSSSLGPSGS GNVAEYMGQM  300
AIALGKLATL ENFLHQADLL RQQTLQQMRR ILTTFQAARA LLVINDYVSR LRALNSLWLA  360
CPREY*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.189810.0somatic embryo
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G276100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2354731e-119AC235473.1 Glycine max strain Williams 82 clone GM_WBc0110I22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003536694.10.0transcription factor TGA2.2
RefseqXP_028182652.10.0transcription factor TGA2.2-like
SwissprotQ6IVC21e-160TGAL1_ORYSJ; Transcription factor TGAL1
TrEMBLA0A0B2PD410.0A0A0B2PD41_GLYSO; Transcription factor HBP-1b(C1)
TrEMBLA0A0R0I0440.0A0A0R0I044_SOYBN; Uncharacterized protein
TrEMBLI1LEY40.0I1LEY4_SOYBN; Uncharacterized protein
STRINGGLYMA10G42280.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68640.11e-128bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]