PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G274300.1.p
Common NameCOL22, GLYMA_10G274300
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family CO-like
Protein Properties Length: 420aa    MW: 46895.4 Da    PI: 5.4036
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G274300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box28.72.7e-091760340
             zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                         +r C+ +  k+++++C  ++ +lC+ C ++ H+       H++v
  Glyma.10G274300.1.p 17 ARACDSCITKRARWYCAADDAFLCQACDSSVHSAnplarrHERV 60
                         578*****************************667888888876 PP
2CCT68.12.4e-23364407144
                  CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                          Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a
  Glyma.10G274300.1.p 364 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 407
                          9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.9071562IPR000315B-box-type zinc finger
SMARTSM003362.9E-101562IPR000315B-box-type zinc finger
PfamPF006436.0E-81760IPR000315B-box-type zinc finger
CDDcd000216.19E-91862No hitNo description
PfamPF062037.0E-18364406IPR010402CCT domain
PROSITE profilePS5101716.083364406IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0016020Cellular Componentmembrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MSSATKNAAN AVGAKTARAC DSCITKRARW YCAADDAFLC QACDSSVHSA NPLARRHERV  60
RLKTASYKST DEQQQQQQQQ PPTWHTKKPR TPRHGKHSRN NNPFHLVPEE GSEEANSHDE  120
NEEQLLYRVP IFDPFVAELC GTNSSPSPVT STDQGVVAAA EVEYKGFQSN GFCSNSSEME  180
NLHGMLPSDA ELAEFAADVE SLLGRGLENE CVGMEELGLV DAKEEECSVG SGKVKMEDQE  240
ESPLVEMEMD MVVGRDDQSF ELSFDYETCE EVKVCDLGLG NELGAKKEND DEVKKNKISL  300
QLDYEAVIIA WASQKSPWTT ADKPNLDPDE CWKQCMGSCE TAYHHPCGEM GGFGIHPVII  360
DGGREARVSR YREKRRTRLF SKKIRYEVRK LNAEKRPRMK GRFVKRASFA PPTFPLLNK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1374390RRTRLFSKKIRYEVRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G274300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM0689040.0HM068904.1 Glycine max CONSTANS-like zinc finger protein (COL22) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001278940.10.0zinc finger protein CONSTANS-LIKE 16-like
TrEMBLI1LEW90.0I1LEW9_SOYBN; CONSTANS-like zinc finger protein
STRINGGLYMA10G42090.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14733392
Representative plantOGRP8021649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.11e-100B-box type zinc finger protein with CCT domain