PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G261100.3.p
Common NameGLYMA_10G2611001
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 279aa    MW: 30119.2 Da    PI: 6.8495
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G261100.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.80.000451551921254
                          HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          R +++ +++++L++l+ +      +K + a++L +A+ YI+ L
  Glyma.10G261100.3.p 155 RKEKLGERIATLQQLVSPF-----GKTDTASVLHEAMGYIRFL 192
                          77788899********998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000838.72E-6135197No hitNo description
PROSITE profilePS5088810.906143192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.0E-7154199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-10154204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MEAKKEYEVD HLSTPTGTSF SQLLFGDDDD DVDESALGLA VDQSYSYNYN NLTRSPLFSI  60
HKAPQMLCFG NHQNEEGGVL LPETNVTPQK SVITSSDSSS ASASSCNHTN TAFNSLPKSN  120
NKKRQEGVAK VGVGSQRQTK KNKAENPTST GHAKRKEKLG ERIATLQQLV SPFGKTDTAS  180
VLHEAMGYIR FLHDQVQVLC SPYLQSLPSS YHQNQHGGGG NNEEEVNKDL RSKGLCLIPV  240
GCTVHVAGSN GADFWSSAAI GNNVSFTISQ AVKRNQDQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G261100.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0918657e-93BT091865.1 Soybean clone JCVI-FLGm-9A23 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025979969.10.0transcription factor bHLH113 isoform X2
TrEMBLI1LEI40.0I1LEI4_SOYBN; Uncharacterized protein
STRINGGLYMA10G40710.30.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19500.12e-48bHLH family protein