PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

FAR1

Protein Properties

Length: 811aa MW: 93297.5 Da PI: 7.4941

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.10G259000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	88.8	7.5e-28	48	135	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY+eYAk++GF++++++s++sk+++e+++++f Cs++g + e+++ ++r+ ++++t+Cka+++vk++ dgkw ++++ +eHnHel Glyma.10G259000.1.p 48 SFYQEYAKSMGFTTSIKNSRRSKKTKEFIDAKFACSRYGVTPESDSG---SSRRPSVKKTDCKACMHVKRKPDGKWIIHEFIKEHNHELL 134 5**************************************999888...7788889*****************************97 PP FAR1 91 p 91 p Glyma.10G259000.1.p 135 P 135 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.1E-25	48	135	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.3E-29	255	348	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.211	535	571	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	9.7E-6	537	570	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.2E-7	546	573	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009585	Biological Process	red, far-red light phototransduction
GO:0010018	Biological Process	far-red light signaling pathway
GO:0042753	Biological Process	positive regulation of circadian rhythm
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 811 aa Download sequence Send to blast
MGDALNEVQH RGGAPAASPK RDIALLEGDK DFELHNGIEF ESHEAAYSFY QEYAKSMGFT 60 TSIKNSRRSK KTKEFIDAKF ACSRYGVTPE SDSGSSRRPS VKKTDCKACM HVKRKPDGKW 120 IIHEFIKEHN HELLPALAYH FRIHRNMKLA EKNNIDILHA VSERTRKMYV EMSRQSSGCQ 180 NIGSFMGDIN YQFDRGQYLA LDEGDAQVML EYFKHVQKES PNFFYSIDLN EEQRLRNLFW 240 IDAKSINDYL SFNDVVSFDT TYIKSNDKLP FAPFVGVNHH SQPVLLGCAL LADETKPTFV 300 WLMKTWLRAM GGQAPKVIIT DQDTTLKTAI EEVFPNVRHC FSLWHILERI PENLSFVIKK 360 HQNFVRKFNK CIFKSWTDEQ FDMRWWKMVT RCELHDDIWF QSLYEDRKKW VPTYMGDTFL 420 AGMSTPQRSE SMNSFFDKYI HKKITLKEFV KQYGIILQNR YDEEAIADFD TLHKQPALKS 480 PSPWEKQMST VYTHAIFKKF QVEVLGVAGC QSRIEAGDGT IAKFIVQDYE KDEEFLVTWN 540 ELSSEVSCFC RLFEYKGFLC RHGLSVLQRC GCSSVPSHYI LKRWTKDAKI KESMADRTRR 600 TQTRVQRYND LCKRAIDLSE EGSLSEENYN VVFRALVDAL KNCVLVNNSN NNGAETSSNA 660 YGHREAEENQ VPLALKLNKK RNAARKRKAQ LEQDVILVDA QDTLQQMDNL SSDAITLNGY 720 YGTQQNVQGL QVQLNLMEPP QDGYYVNQHS MQGLGPLNSM GPSHDGFFGT QQGIHGLGGQ 780 LEFRPATTFG YSLHQDEPDP QFHGNSSRNT *

Sequence ? help Back to Top

Protein Sequence Length: 811 aa Download sequence Send to blast

MGDALNEVQH RGGAPAASPK RDIALLEGDK DFELHNGIEF ESHEAAYSFY QEYAKSMGFT  60
TSIKNSRRSK KTKEFIDAKF ACSRYGVTPE SDSGSSRRPS VKKTDCKACM HVKRKPDGKW  120
IIHEFIKEHN HELLPALAYH FRIHRNMKLA EKNNIDILHA VSERTRKMYV EMSRQSSGCQ  180
NIGSFMGDIN YQFDRGQYLA LDEGDAQVML EYFKHVQKES PNFFYSIDLN EEQRLRNLFW  240
IDAKSINDYL SFNDVVSFDT TYIKSNDKLP FAPFVGVNHH SQPVLLGCAL LADETKPTFV  300
WLMKTWLRAM GGQAPKVIIT DQDTTLKTAI EEVFPNVRHC FSLWHILERI PENLSFVIKK  360
HQNFVRKFNK CIFKSWTDEQ FDMRWWKMVT RCELHDDIWF QSLYEDRKKW VPTYMGDTFL  420
AGMSTPQRSE SMNSFFDKYI HKKITLKEFV KQYGIILQNR YDEEAIADFD TLHKQPALKS  480
PSPWEKQMST VYTHAIFKKF QVEVLGVAGC QSRIEAGDGT IAKFIVQDYE KDEEFLVTWN  540
ELSSEVSCFC RLFEYKGFLC RHGLSVLQRC GCSSVPSHYI LKRWTKDAKI KESMADRTRR  600
TQTRVQRYND LCKRAIDLSE EGSLSEENYN VVFRALVDAL KNCVLVNNSN NNGAETSSNA  660
YGHREAEENQ VPLALKLNKK RNAARKRKAQ LEQDVILVDA QDTLQQMDNL SSDAITLNGY  720
YGTQQNVQGL QVQLNLMEPP QDGYYVNQHS MQGLGPLNSM GPSHDGFFGT QQGIHGLGGQ  780
LEFRPATTFG YSLHQDEPDP QFHGNSSRNT *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269\|PubMed:11889039, ECO:0000269\|PubMed:12753585, ECO:0000269\|PubMed:18033885, ECO:0000269\|PubMed:22634759}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00434	DAP	Transfer from AT4G15090	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.10G259000.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. {ECO:0000269\|PubMed:18033885}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC235177	0.0	AC235177.1 Glycine max strain Williams 82 clone GM_WBb0007H11, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006589621.1	0.0	protein FAR-RED IMPAIRED RESPONSE 1 isoform X1
Refseq	XP_028185706.1	0.0	protein FAR-RED IMPAIRED RESPONSE 1-like isoform X1
Swissprot	Q9SWG3	0.0	FAR1_ARATH; Protein FAR-RED IMPAIRED RESPONSE 1
TrEMBL	A0A445ISY5	0.0	A0A445ISY5_GLYSO; Protein FAR-RED IMPAIRED RESPONSE 1 isoform A
TrEMBL	K7LLH0	0.0	K7LLH0_SOYBN; Uncharacterized protein
STRING	GLYMA10G40510.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530
Representative plant	OGRP13457	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	0.0	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Glyma.10G259000.1.p
Entrez Gene	100805377

Publications ? help Back to Top
Domergue F, et al. Three Arabidopsis fatty acyl-coenzyme A reductases, FAR1, FAR4, and FAR5, generate primary fatty alcohols associated with suberin deposition. Plant Physiol., 2010. 153(4): p. 1539-54 [PMID:20571114] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Wang C, et al. SCAB3 Is Required for Reorganization of Actin Filaments during Light Quality Changes. J Genet Genomics, 2015. 42(4): p. 161-8 [PMID:25953354] Wang W, et al. A pair of light signaling factors FHY3 and FAR1 regulates plant immunity by modulating chlorophyll biosynthesis. J Integr Plant Biol, 2016. 58(1): p. 91-103 [PMID:25989254] Ma L, et al. Arabidopsis FHY3 and FAR1 Regulate Light-Induced myo-Inositol Biosynthesis and Oxidative Stress Responses by Transcriptional Activation of MIPS1. Mol Plant, 2016. 9(4): p. 541-57 [PMID:26714049] Siddiqui H,Khan S,Rhodes BM,Devlin PF FHY3 and FAR1 Act Downstream of Light Stable Phytochromes. Front Plant Sci, 2016. 7: p. 175 [PMID:26941752] Liu L,Li B,Liu X FAR-RED ELONGATED HYPOCOTYL3 promotes floral meristem determinacy in Arabidopsis. Plant Signal Behav, 2016. 11(10): p. e1238545 [PMID:27660915] Ma L,Xue N,Fu X,Zhang H,Li G Arabidopsis thaliana FAR-RED ELONGATED HYPOCOTYLS3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) modulate starch synthesis in response to light and sugar. New Phytol., 2017. 213(4): p. 1682-1696 [PMID:27859295] Liu Y, et al. Light and Ethylene Coordinately Regulate the Phosphate Starvation Response through Transcriptional Regulation of PHOSPHATE STARVATION RESPONSE1. Plant Cell, 2017. 29(9): p. 2269-2284 [PMID:28842534] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]