 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Glyma.10G257900.1.p |
| Common Name | GLYMA_10G257900, LOC100806788 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
| Family |
C2H2 |
| Protein Properties |
Length: 258aa MW: 27518.2 Da PI: 7.3273 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.10G257900.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 11.3 | 0.0011 | 88 | 110 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++C+ C+k F++ L H +H
Glyma.10G257900.1.p 88 HRCTVCNKAFPSYQALGGHKASH 110
79**********99999998887 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009409 | Biological Process | response to cold |
| GO:0010200 | Biological Process | response to chitin |
| GO:0042538 | Biological Process | hyperosmotic salinity response |
| GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
| GO:0046872 | Molecular Function | metal ion binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 258 aa
Download sequence Send
to blast |
MALEALNSPT AATTPFRGYQ EEEEEVDLHL REPWAKRKRS KRPRFESEEE YLALCLIMLA 60
QSGNNNNTQL PSSSQSHKEA SPPLKLSHRC TVCNKAFPSY QALGGHKASH RKASSESNTT 120
ASAVAVSATA NDSVSASTVG GGRMHECSIC HKSFPTGQAL GGHKRCHYDG GNNHSNSNAN 180
GNNSSGVTTS DGGAASSSSH AFRGFDLNLP APLTEFWSPA GFDFGKKKVG VEQEVESPLP 240
VTAKRPRLFS GEDNEEA*
|
| Expression -- UniGene
? help Back to Top |
| UniGene ID |
E-value |
Expressed in |
| Gma.31108 | 0.0 | cotyledon| flower| hypocotyl| leaf| root| seed coat |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Highly expressed in roots and at lower levels in leaves and stems. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional repressor involved in the inhibition of plant growth under abiotic stress conditions. Can repress the expression of various genes, including osmotic stress and abscisic acid-repressive genes and auxin-inducible genes, by binding to their promoter regions in a DNA sequence-specific manner. {ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By abscisic acid (ABA), ethylene, dehydration, salt and cold. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | JQ743888 | 0.0 | JQ743888.1 Glycine max C2H2-type zinc finger protein (STF-2) mRNA, partial cds. |
