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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Glyma.10G257900.1.p |
Common Name | GLYMA_10G257900, LOC100806788 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family |
C2H2 |
Protein Properties |
Length: 258aa MW: 27518.2 Da PI: 7.3273 |
Description |
C2H2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Glyma.10G257900.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-C2H2 | 11.3 | 0.0011 | 88 | 110 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++C+ C+k F++ L H +H
Glyma.10G257900.1.p 88 HRCTVCNKAFPSYQALGGHKASH 110
79**********99999998887 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0009409 | Biological Process | response to cold |
GO:0010200 | Biological Process | response to chitin |
GO:0042538 | Biological Process | hyperosmotic salinity response |
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
Protein Sequence Length: 258 aa
Download sequence Send
to blast |
MALEALNSPT AATTPFRGYQ EEEEEVDLHL REPWAKRKRS KRPRFESEEE YLALCLIMLA 60 QSGNNNNTQL PSSSQSHKEA SPPLKLSHRC TVCNKAFPSY QALGGHKASH RKASSESNTT 120 ASAVAVSATA NDSVSASTVG GGRMHECSIC HKSFPTGQAL GGHKRCHYDG GNNHSNSNAN 180 GNNSSGVTTS DGGAASSSSH AFRGFDLNLP APLTEFWSPA GFDFGKKKVG VEQEVESPLP 240 VTAKRPRLFS GEDNEEA*
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Expression -- UniGene
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UniGene ID |
E-value |
Expressed in |
Gma.31108 | 0.0 | cotyledon| flower| hypocotyl| leaf| root| seed coat |
Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Highly expressed in roots and at lower levels in leaves and stems. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcriptional repressor involved in the inhibition of plant growth under abiotic stress conditions. Can repress the expression of various genes, including osmotic stress and abscisic acid-repressive genes and auxin-inducible genes, by binding to their promoter regions in a DNA sequence-specific manner. {ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By abscisic acid (ABA), ethylene, dehydration, salt and cold. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | JQ743888 | 0.0 | JQ743888.1 Glycine max C2H2-type zinc finger protein (STF-2) mRNA, partial cds. |