PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G257500.1.p
Common NameGLYMA_10G257500
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 359aa    MW: 39394.6 Da    PI: 4.5746
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G257500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH322.3e-102803201055
                          HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  Glyma.10G257500.1.p 280 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 320
                          9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.148270319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.97E-14274335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-11276325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-12276329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.55E-12279324No hitNo description
PfamPF000101.1E-7280320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0016049Biological Processcell growth
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0048766Biological Processroot hair initiation
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MEPVQLISEE WGSLCGFHTT EEADFMAQLF GCNTLVTEKH CGNTTLGFWP GHDESTIVAM  60
TDTNSNSYLP PNVTDTNFLC FSQGSSSSTD NSGNNIFSIT SSGAYSCDPE ANFDSVSMVL  120
CLGDAKFSPH SFQCDDNSSQ QINENTDEES SLDPWKLAIA DNNSQAKREY EMMVSEPVEV  180
DRSRNLENLA KRLKSSIEVS KTLRSAKSGK NSKSASVSND EDDRSLSLQA QRNSCFSQSD  240
SNAYLEPNGG ASKDPAPPNL HRKSRATTGA ATDPQSLYAR KRRERINERL RILQNLVPNG  300
TKVDISTMLE EAVQYVKFLQ LQIKLLSSDD LWMYAPIAYN GINIGLDLSI SPTKGISM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G257500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2351770.0AC235177.1 Glycine max strain Williams 82 clone GM_WBb0007H11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028182634.10.0transcription factor bHLH84-like
TrEMBLK7LLF70.0K7LLF7_SOYBN; Uncharacterized protein
STRINGGLYMA10G40360.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80733121
Representative plantOGRP10481454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.12e-41bHLH family protein