PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.10G257400.1.p | ||||||||
Common Name | GLYMA_10G257400, LOC100805192 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 353aa MW: 38543.6 Da PI: 4.6305 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34 | 5.3e-11 | 276 | 316 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 rrRR+riN+++ L+ l+P+ +K++ +++Le+Av+Y+k Lq Glyma.10G257400.1.p 276 RRRRERINERLKILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 316 9******************97.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.83E-14 | 265 | 331 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.402 | 266 | 315 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.4E-13 | 271 | 325 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.2E-12 | 272 | 321 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.4E-8 | 276 | 316 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 0.0017 | 282 | 320 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 353 aa Download sequence Send to blast |
MDPVEQISEE WSSLSGFYTA EEANFMSQLL GNCSLPENLC GNFNLGIPSA IWPGHESTIV 60 SVTGINESPY FHANGDNNNN NYLCFSQGSS STADSSNIFP TTSGNSYTLN DPVANIGYMS 120 TDFANLGPCN VQGSDSQQLN ENTHEELGLE VIADKKLQDR QECEVLVSEA AEEDINTNLE 180 KSGKRSRCSM QVRKSKKNVK PVKKPKSDSI SNSEEGRSPH LQGCCSENDD SSASQELNGG 240 GSSSLSLEDS TSLKLKGKKS TANRGSATDP QSVYARRRRE RINERLKILQ NLVPNGTKVD 300 ISTMLEEAVQ YVKFLQLQIK LLSSDDLWMY SPIAYNGMNI GLDLNITPTK QP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 195 | 203 | KKNVKPVKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.10G257400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235177 | 0.0 | AC235177.1 Glycine max strain Williams 82 clone GM_WBb0007H11, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003536579.1 | 0.0 | transcription factor bHLH84 | ||||
Refseq | XP_028183766.1 | 0.0 | transcription factor bHLH84-like | ||||
TrEMBL | A0A445ISS2 | 0.0 | A0A445ISS2_GLYSO; Transcription factor bHLH84 | ||||
TrEMBL | K7LLF6 | 0.0 | K7LLF6_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA10G40350.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF807 | 33 | 121 | Representative plant | OGRP1048 | 14 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G14760.1 | 1e-44 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.10G257400.1.p |
Entrez Gene | 100805192 |