PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.10G246200.1.p | ||||||||
Common Name | GLYMA_10G246200, LOC100777204 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | TCP | ||||||||
Protein Properties | Length: 381aa MW: 42963.8 Da PI: 7.342 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 136.6 | 2.2e-42 | 105 | 249 | 1 | 133 |
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg 88 a++kkdrhskihT++g+RdRRvRls+e+a++fFdLqd+L fdk+s+t+eWL+++++ aikel++++ s + ++ + +ss+ ++ s+++ Glyma.10G246200.1.p 105 ATAKKDRHSKIHTSQGLRDRRVRLSSEIARKFFDLQDMLEFDKPSNTLEWLFTKSENAIKELARSKHSGSVSTggD-KSSRDPSGDSNNN 193 579**************************************************************55555333321.1111111111111 PP TCP 89 ............kaaksaakskksqksaasalnlakesrakarararertrekmrik 133 ++ k k +q+ +a + +kesr++arararert k++ + Glyma.10G246200.1.p 194 fnnnksmvgggvGDGSKGRKLKWAQRGDA-CIQNKKESRERARARARERTCFKKCSS 249 33444678999844444445555566555.4777889*************9999976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 9.3E-42 | 106 | 247 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 34.814 | 108 | 166 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 10.424 | 228 | 245 | IPR017888 | CYC/TB1, R domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 381 aa Download sequence Send to blast |
MFSSTYDSNF FPNFPLSTYP ILPFLIESEN DFASHTLLVE DPLVVPLTHD PPPFPEETVA 60 NFAVADHHCT AMLDNQHDAA ANTNYGSHYG SSISNFLTHQ KPAAATAKKD RHSKIHTSQG 120 LRDRRVRLSS EIARKFFDLQ DMLEFDKPSN TLEWLFTKSE NAIKELARSK HSGSVSTGGD 180 KSSRDPSGDS NNNFNNNKSM VGGGVGDGSK GRKLKWAQRG DACIQNKKES RERARARARE 240 RTCFKKCSSI RVQQQKDFDE RCPATTNTTQ MLHQLWSSIQ PEPEEPRARW VQPYYNPYFV 300 DDNEAPRDHG FNVIEESIMI KRNMKPLSQP NLVIPREASF NNNEFPLLPY STTPNWESTN 360 GAVNYCGIST MNLSTCFMNP * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 230 | 240 | RERARARARER |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.10G246200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003535644.2 | 0.0 | transcription factor CYCLOIDEA | ||||
TrEMBL | K7LL85 | 0.0 | K7LL85_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA10G39141.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1738 | 32 | 94 | Representative plant | OGRP180 | 15 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67260.2 | 1e-24 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.10G246200.1.p |
Entrez Gene | 100777204 |