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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.10G245500.1.p | ||||||||
Common Name | GLYMA_10G245500, LOC100820491 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | CPP | ||||||||
Protein Properties | Length: 761aa MW: 82345.3 Da PI: 6.156 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 50.2 | 4.9e-16 | 473 | 511 | 2 | 40 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+CnCkkskClk+YCeCfaag++C e C C+dC+Nk Glyma.10G245500.1.p 473 SCKRCNCKKSKCLKLYCECFAAGVYCIEPCACHDCFNKP 511 689**********************************96 PP | |||||||
2 | TCR | 50.1 | 5.4e-16 | 558 | 597 | 1 | 40 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN+ Glyma.10G245500.1.p 558 RHKRGCNCKKSSCLKKYCECYQGGVGCSISCRCEGCKNTY 597 589***********************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 7.2E-18 | 472 | 513 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 36.811 | 473 | 598 | IPR005172 | CRC domain |
Pfam | PF03638 | 1.5E-11 | 475 | 510 | IPR005172 | CRC domain |
SMART | SM01114 | 2.6E-17 | 558 | 599 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.5E-11 | 560 | 596 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 761 aa Download sequence Send to blast |
MDTPDRSKIN TPLSQFEDSP VFNYISNLSP IEPVKSVHLT HTFNSYSFSS PPSVFTSPHG 60 NCHKESRFLK RHNLLETSKP KVWSEDVNSV YSSEETLADS TQACHESSEQ QENTAQKISI 120 GDASIEPCNE NPNISIELPQ VLKCNLGSPG YEPLLCCDEA NSLLELPGNG KPASDVAYVP 180 EGSEKDSIEG EMHLLGLCQI EEAKVEGPNC GVDSLITEVS DLLMLSPPNV TEAFKGLNKQ 240 LNPSIELGNF MTLIPQSATN DGQQMHIGNA VASGSEHEIE DHPSESAAAT GTGQRQDNLA 300 NVALVASHPS ENMDNKLVYA RHRGIRRRCL DFEMAIVQWK NPADNSNTNS STAISDEGNV 360 GNEKQLLPTK HSGDSRRCVL PGIGLHLNAL ASLKDCKNVK IENLSSGRQP NLHCSPSSVQ 420 LSASQELQLS LVPASSEIDL VPSENEVQPG EDFQQNSPKK KRCKLEPAGE GESCKRCNCK 480 KSKCLKLYCE CFAAGVYCIE PCACHDCFNK PIHVETVLQT RQQIESRNPL AFAPKVIRSS 540 DSVSEIGDDP NKTPASARHK RGCNCKKSSC LKKYCECYQG GVGCSISCRC EGCKNTYGRK 600 DGSVPSGLEA EPEEETEACE KGVVENASLK TETKNTEDHP DQSLATTPLP LSRSLLPLSF 660 SSKCKPPRSS VITISSSGLL VGQKLGKSNA PWSQSQPKCE KPLETVPDDD SSVTCIKTSS 720 PNGKRISSPN CKVGSSPTRR GGRKLILQSI SSFPSLTPHH * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 1e-16 | 477 | 595 | 14 | 120 | Protein lin-54 homolog |
5fd3_B | 1e-16 | 477 | 595 | 14 | 120 | Protein lin-54 homolog |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 457 | 464 | PKKKRCKL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.10G245500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003535640.1 | 0.0 | protein tesmin/TSO1-like CXC 2 | ||||
Refseq | XP_028185643.1 | 0.0 | protein tesmin/TSO1-like CXC 2 | ||||
TrEMBL | A0A445ISA7 | 0.0 | A0A445ISA7_GLYSO; Protein tesmin/TSO1-like CXC 2 isoform A | ||||
TrEMBL | K7LL80 | 0.0 | K7LL80_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA10G39080.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2619 | 33 | 75 |
Representative plant | OGRP993 | 17 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14770.1 | 1e-111 | TESMIN/TSO1-like CXC 2 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.10G245500.1.p |
Entrez Gene | 100820491 |