PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G241400.2.p
Common NameGLYMA_10G241400
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 247aa    MW: 28171.9 Da    PI: 9.7413
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G241400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.77.8e-1276128155
                          CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +++ h e+Er+RR+++ +  + Lr+llP ++   ++K s ++   +Av+YI++Lq
  Glyma.10G241400.2.p  76 KKMVHREIERQRRQEMATLHASLRSLLPLRF--IKGKRSISDQMNEAVNYINHLQ 128
                          6889*************************65..*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.49E-1275146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.87475127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.5E-976128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.7E-1076144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.39E-776132No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0090575Cellular ComponentRNA polymerase II transcription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MFPLQRGNEL VIHFSNGLYP QHKISQDLIR DDQNIDQSPH VGYSDKKWRT SRPKKLFYHE  60
AAATSHANSS NQEYAKKMVH REIERQRRQE MATLHASLRS LLPLRFIKGK RSISDQMNEA  120
VNYINHLQKN IKELSDKRDK LKKKPSINST PEGHENCKHV SSGFTIHQNS GGAVGIEISG  180
FSEEEVPLSK LLKLVLEERL EVVSCLSTKV NGRLLHSLQC EVDNSDSVDL SELRRKFSNA  240
QNHLIQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.302180.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G241400.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311160.0KT031116.1 Glycine max clone HN_CCL_215 bHLH transcription factor (Glyma10g38630.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028183610.10.0transcription factor bHLH118-like isoform X3
TrEMBLK7LL610.0K7LL61_SOYBN; Uncharacterized protein
STRINGGLYMA10G38630.11e-177(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25400.14e-30bHLH family protein