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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.10G240900.3.p | ||||||||
Common Name | GLYMA_10G240900, LOC100802197 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 229aa MW: 26297.9 Da PI: 9.2633 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 92.4 | 2.2e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +ri+nk+nrqvtfskRrng+lKKA+ELSvLCdae+a++ifss+gkl+ yss Glyma.10G240900.3.p 9 ERIQNKINRQVTFSKRRNGLLKKAFELSVLCDAEIALVIFSSRGKLFQYSS 59 69***********************************************96 PP | |||||||
2 | K-box | 62.2 | 2e-21 | 84 | 167 | 14 | 97 |
K-box 14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 + +++qel L+ + e+Lqr+qR+llGe+Le+Ls+keL++Le+qL++ l + R++ ++ l++ i+el k ++l+++nk L+++ Glyma.10G240900.3.p 84 EHQSEQELLVLRVKHESLQRTQRNLLGEELEPLSMKELHSLEKQLDRTLAQARKHLTQKLVSRIDELHGKVHSLEQANKHLESQ 167 446789***************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.5E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.216 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 9.67E-40 | 2 | 72 | No hit | No description |
SuperFamily | SSF55455 | 3.01E-31 | 2 | 74 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.2E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.6E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.2E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.2E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.4E-18 | 83 | 166 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 12.938 | 84 | 178 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MGRGKVVLER IQNKINRQVT FSKRRNGLLK KAFELSVLCD AEIALVIFSS RGKLFQYSST 60 DINRIIEKYR QCCFNMSQTG DVAEHQSEQE LLVLRVKHES LQRTQRNLLG EELEPLSMKE 120 LHSLEKQLDR TLAQARKHLT QKLVSRIDEL HGKVHSLEQA NKHLESQERG KCTQICEGSP 180 NGHILQDKQV NQFEYGTAGS FRLQQEQTTA SKGKEIETIE DWLRPKQS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 4e-25 | 1 | 69 | 1 | 69 | MEF2C |
5f28_B | 4e-25 | 1 | 69 | 1 | 69 | MEF2C |
5f28_C | 4e-25 | 1 | 69 | 1 | 69 | MEF2C |
5f28_D | 4e-25 | 1 | 69 | 1 | 69 | MEF2C |
6byy_A | 4e-25 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6byy_B | 4e-25 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6byy_C | 4e-25 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6byy_D | 4e-25 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_A | 5e-25 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_B | 5e-25 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_C | 5e-25 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_D | 5e-25 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.28803 | 0.0 | meristem| root| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the floral meristem, lodicule, palea, lemma, receptacle, empty glume, stamen, pistil, and ovule. {ECO:0000269|PubMed:19820190}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Plays minor but redundant roles with MADS6 in floral development. {ECO:0000269|PubMed:19820190}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.10G240900.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT098753 | 0.0 | BT098753.1 Soybean clone JCVI-FLGm-12N24 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006589572.1 | 1e-167 | MADS-box transcription factor 17 isoform X3 | ||||
Swissprot | Q7XUN2 | 5e-60 | MAD17_ORYSJ; MADS-box transcription factor 17 | ||||
TrEMBL | A0A0R0HYF7 | 1e-166 | A0A0R0HYF7_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA10G38580.1 | 1e-164 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G24260.1 | 3e-58 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.10G240900.3.p |
Entrez Gene | 100802197 |
Publications ? help Back to Top | |||
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