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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Glyma.10G240500.1.p |
| Common Name | GLYMA_10G240500, LOC100800580 |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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| Family |
MIKC_MADS |
| Protein Properties |
Length: 215aa MW: 24643.9 Da PI: 8.5994 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.10G240500.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 93.1 | 1.3e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
k+ie+++ rqvtfskRr g+lKKA+ELSvLCdaevavi+fs++g+lye+ss
Glyma.10G240500.1.p 9 KKIEDTTSRQVTFSKRRSGLLKKAYELSVLCDAEVAVIVFSQNGRLYEFSS 59
68***********************************************96 PP
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| 2 | K-box | 69.4 | 1.1e-23 | 84 | 171 | 12 | 99 |
K-box 12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99
++l+ ++a L k+ie L++++R llG++++s+s+ eL+ +e+qL+ sl+++R++K++l++eqi++l+ +e +l +en +L+++++
Glyma.10G240500.1.p 84 DYIQQLKLDSASLAKKIELLEHSKRELLGQSVSSCSYDELKGIEEQLQISLQRVRQRKTQLYTEQIDQLRSQESNLLKENAKLSAMWQ 171
567899999**************************************************************************99876 PP
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| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50066 | 31.875 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| SMART | SM00432 | 1.1E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 4.2E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| SuperFamily | SSF55455 | 4.06E-32 | 3 | 74 | IPR002100 | Transcription factor, MADS-box |
| PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 7.54E-41 | 3 | 75 | No hit | No description |
| Pfam | PF00319 | 2.3E-27 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 4.2E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 4.2E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS51297 | 13.636 | 86 | 176 | IPR002487 | Transcription factor, K-box |
| Pfam | PF01486 | 7.0E-23 | 87 | 169 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 215 aa
Download sequence Send
to blast |
MVRGKVQLKK IEDTTSRQVT FSKRRSGLLK KAYELSVLCD AEVAVIVFSQ NGRLYEFSSS 60
DMTKILERYR EHTKDVPASK FGDDYIQQLK LDSASLAKKI ELLEHSKREL LGQSVSSCSY 120
DELKGIEEQL QISLQRVRQR KTQLYTEQID QLRSQESNLL KENAKLSAMW QRAEKSSQQQ 180
WPRHTQAEAE PHCSSSQSLD VDTELFIGLP KQQC*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed in the shoot apical meristem (SAM) during the vegetative phase and the floral transition. After floral transition, expressed in apical meristem (AM), inflorescence meristem (IM) and floral primordia. {ECO:0000269|PubMed:21609362}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in quiescent center (QC) cells of root tips (PubMed:18162590, PubMed:21689171). Expressed at the base of the petiole of cotyledons and leaves, in flower buds, petals, sepals and abscission zone of flowers and siliques. {ECO:0000269|PubMed:18162590, ECO:0000269|PubMed:21689171}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | MADS-box transcription factor that acts with AGL71 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1 (PubMed:21609362). Plays a role in controlling flower organ senescence and abscission by repressing ethylene responses and regulating the expression of BOP2 and IDA (PubMed:21689171). {ECO:0000269|PubMed:21609362, ECO:0000269|PubMed:21689171}. |
