PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G237800.1.p
Common NameGLYMA_10G237800, LOC100808202
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HSF
Protein Properties Length: 290aa    MW: 32546.8 Da    PI: 7.5409
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G237800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.21.7e-35241142101
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k++++++d++++++isw+++g+sf+v++++ fak++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF++++F++++k
  Glyma.10G237800.1.p  24 FLTKTFQLVDDHTIDHVISWNDSGSSFIVWNTTAFAKDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFSNEYFRRDEK 104
                          9*****************************************************************99.........************* PP

                          XXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkk 101
                          +ll++i+r+k
  Glyma.10G237800.1.p 105 RLLCEIQRRK 114
                          ********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004154.3E-5620113IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.63E-3321113IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.9E-3721113IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.9E-3124113IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-192447IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-196274IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406387IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-197587IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MAPPLEHNGV STSGDSLRSI PTPFLTKTFQ LVDDHTIDHV ISWNDSGSSF IVWNTTAFAK  60
DLLPKYFKHN NFSSFVRQLN TYGFRKVVPD RWEFSNEYFR RDEKRLLCEI QRRKILPATP  120
PTRATATAAV LSPLPLSTIP PAKLIVSPSN SAEEQVISSN SSPAELLDEN DRLRKENILL  180
TKELEEMRSL CNNIFNLMSN YANVQADGGS AGVAARCFGE DAVEEMNPKL FGVVIGTKRA  240
REENDTVLSL HQPFHADVKS EALDFARRGE NKKTPWLNQC HRANQRVCN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-232411329129Heat shock factor protein 1
5d5v_B4e-232411329129Heat shock factor protein 1
5d5v_D4e-232411329129Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.623040.0leaf
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G237800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2352301e-171AC235230.1 Glycine max strain Williams 82 clone GM_WBb0026I18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001340363.10.0heat stress transcription factor 19
SwissprotQ9SCW47e-86HFB2A_ARATH; Heat stress transcription factor B-2a
TrEMBLA0A0R0I4X80.0A0A0R0I4X8_SOYBN; Uncharacterized protein
STRINGGLYMA10G38240.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20373482
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.12e-87heat shock transcription factor B2A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]