PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G236400.1.p
Common NameGLYMA_10G236400, LOC100807142
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 310aa    MW: 34780.2 Da    PI: 7.754
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G236400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding612.6e-191461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg+WT+eEd+ lvd+++++G g+W++ +++ g+ R++k+c++rw +yl
  Glyma.10G236400.1.p 14 RGAWTPEEDQSLVDYIHKHGHGSWRSLPKHAGLLRCGKSCRLRWINYL 61
                         89******************************99************97 PP
2Myb_DNA-binding54.23.4e-1767112148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg++T eE+  +v+++ +lG++ W++Ia+ ++ gRt++++k++w+++l
  Glyma.10G236400.1.p  67 RGPFTSEEESTIVQLHGMLGNR-WASIASQLP-GRTDNEIKNYWNTHL 112
                          89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.496961IPR017930Myb domain
SuperFamilySSF466891.5E-3011108IPR009057Homeodomain-like
SMARTSM007179.9E-141363IPR001005SANT/Myb domain
PfamPF002498.9E-181461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.6E-241568IPR009057Homeodomain-like
CDDcd001672.32E-111661No hitNo description
PROSITE profilePS5129425.7662116IPR017930Myb domain
SMARTSM007173.9E-1666114IPR001005SANT/Myb domain
PfamPF002491.4E-1567112IPR001005SANT/Myb domain
CDDcd001675.69E-1169112No hitNo description
Gene3DG3DSA:1.10.10.602.8E-2669116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MGKAPCCEKH GVRRGAWTPE EDQSLVDYIH KHGHGSWRSL PKHAGLLRCG KSCRLRWINY  60
LRPGIKRGPF TSEEESTIVQ LHGMLGNRWA SIASQLPGRT DNEIKNYWNT HLKKRLLRSC  120
YSQRAKQLCV IPDPTIVKSE SPSTRHMVQW ESVRVEAEAR LSMESTMLNS WPTSKTCPDH  180
FLQLWNSEVG KSFRMIKGKE EGVVSQSLVS QPSSSSKLES CSDVSLQVKN NTGNSSCIPK  240
LEDVSMVHEQ TSSYKPKLDD DTAGSDSGNY EFLDTSDSTL KHLLHMPDSD MGFLGQNDHF  300
QNLLDGTCD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-28141167108B-MYB
1h8a_C4e-281411627128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.376870.0seed coat
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in cotyledon and hypocotyls of germinating seeds. {ECO:0000269|PubMed:19232308}.
UniprotTISSUE SPECIFICITY: Expressed in the shoot apex, young flower buds, developing carpels and siliques (PubMed:19232308). Expressed in floral meristem, initiating floral primordia and developing flowers (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G236400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2352300.0AC235230.1 Glycine max strain Williams 82 clone GM_WBb0026I18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003535618.10.0transcription factor MYB41
RefseqXP_006589547.10.0transcription factor MYB41
RefseqXP_028182468.10.0transcription factor MYB41-like
SwissprotQ9M2D92e-91MYB17_ARATH; Transcription factor MYB17
TrEMBLA0A0B2QK180.0A0A0B2QK18_GLYSO; Myb-related protein Myb4
TrEMBLK7LL350.0K7LL35_SOYBN; Uncharacterized protein
STRINGGLYMA10G38090.30.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23313280
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.12e-89myb domain protein 17