PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

C2H2

Protein Properties

Length: 643aa MW: 71644.1 Da PI: 9.2458

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.10G233400.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.8	4e-05	77	99	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 kC++C++ F ++ n++rHir+ H Glyma.10G233400.3.p 77 KCNKCSREFCSPINYRRHIRVqH 99 7*******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.328	76	104	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	78	99	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 643 aa Download sequence Send to blast
MPVAKLPASG TIDFRKTDDG SDSLDTIIRQ AIGKEPLLSF PRAGDSPVQW IQLLNALDQQ 60 ELPGWPLLSP VKVQLQKCNK CSREFCSPIN YRRHIRVQHR LKKLDKDSEK NRDLLGAYWD 120 KLSIEESKEV VSFKNVMLEE VPGSSILEAL TTLRKQGFSS LPQYYLRAGT ALLNIVQSRP 180 SSFPISSQEL FSILDDSSEK TFLVGSAVSM QRYVFDGEAG KIGLEPKNLV ACTSFLLEQK 240 LVKAWLADKD AEALRCQKLL VEEEEAAQKR KAEILERKRQ KKLRQKEHKA RERLEDDTEI 300 KENISSTGED VLPAEASSGT CDFEAQNPDI FADHSPPPHV TSRCLDTNEV VEGDTVSGYD 360 FDTDQYIERQ ASRGHNRRRI MAARWQGLPK SQWAKANGSH AGQNSQMSKL GVIQKHGTNR 420 DQRAAPIVNG SKVWSRKPKP ETNGVVLKAK LQKEPDKAQR DCVVENLAKQ NTAQEKPVKH 480 DSFQGSNGRL TVKLWRPVSQ LGTKDPLPLQ NGETEADVIN GKYDQNLSGQ SSLRLCSIDG 540 SDIGFEDNFS HTGAKVDSES LRLTSHAAKA FLAQRWKEAI SSNHVKLVVT PDCQSSNADR 600 FNILANTENR LPATSGVAKS KPKTKPEKGM KIKYIPKQKE AT*

Sequence ? help Back to Top

Protein Sequence Length: 643 aa Download sequence Send to blast

MPVAKLPASG TIDFRKTDDG SDSLDTIIRQ AIGKEPLLSF PRAGDSPVQW IQLLNALDQQ  60
ELPGWPLLSP VKVQLQKCNK CSREFCSPIN YRRHIRVQHR LKKLDKDSEK NRDLLGAYWD  120
KLSIEESKEV VSFKNVMLEE VPGSSILEAL TTLRKQGFSS LPQYYLRAGT ALLNIVQSRP  180
SSFPISSQEL FSILDDSSEK TFLVGSAVSM QRYVFDGEAG KIGLEPKNLV ACTSFLLEQK  240
LVKAWLADKD AEALRCQKLL VEEEEAAQKR KAEILERKRQ KKLRQKEHKA RERLEDDTEI  300
KENISSTGED VLPAEASSGT CDFEAQNPDI FADHSPPPHV TSRCLDTNEV VEGDTVSGYD  360
FDTDQYIERQ ASRGHNRRRI MAARWQGLPK SQWAKANGSH AGQNSQMSKL GVIQKHGTNR  420
DQRAAPIVNG SKVWSRKPKP ETNGVVLKAK LQKEPDKAQR DCVVENLAKQ NTAQEKPVKH  480
DSFQGSNGRL TVKLWRPVSQ LGTKDPLPLQ NGETEADVIN GKYDQNLSGQ SSLRLCSIDG  540
SDIGFEDNFS HTGAKVDSES LRLTSHAAKA FLAQRWKEAI SSNHVKLVVT PDCQSSNADR  600
FNILANTENR LPATSGVAKS KPKTKPEKGM KIKYIPKQKE AT*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	275	282	ERKRQKKL

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.16117	0.0	cotyledon\| flower\| hypocotyl\| leaf\| root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.10G233400.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	1e-126	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014618835.1	0.0	uncharacterized protein LOC100799153
Refseq	XP_028185431.1	0.0	uncharacterized protein LOC114372182
TrEMBL	A0A0R0HXZ2	0.0	A0A0R0HXZ2_SOYBN; Uncharacterized protein
STRING	GLYMA10G37780.1	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	1e-144	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Glyma.10G233400.3.p