PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G233400.1.p
Common NameGLYMA_10G233400, LOC100799153
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 671aa    MW: 74500.2 Da    PI: 9.0323
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G233400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.74.2e-057799223
                         EETTTTEEESSHHHHHHHHHH.T CS
              zf-C2H2  2 kCpdCgksFsrksnLkrHirt.H 23
                         kC++C++ F ++ n++rHir+ H
  Glyma.10G233400.1.p 77 KCNKCSREFCSPINYRRHIRVqH 99
                         7*******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.32876104IPR007087Zinc finger, C2H2
PROSITE patternPS0002807899IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 671 aa     Download sequence    Send to blast
MPVAKLPASG TIDFRKTDDG SDSLDTIIRQ AIGKEPLLSF PRAGDSPVQW IQLLNALDQQ  60
ELPGWPLLSP VKVQLQKCNK CSREFCSPIN YRRHIRVQHR LKKLDKDSEK NRDLLGAYWD  120
KLSIEESKEV VSFKNVMLEE VPGSSILEAL TTLRKQGFSS LPQYYLRAGT ALLNIVQSRP  180
SSFPISSQEL FSILDDSSEK TFLVGSAVSM QRYVFDGEAG KIGLEPKNLV ACTSFLLEQK  240
LVKAWLADKD AEALRCQKLL VEEEEAAQKR KAEILERKRQ KKLRQKEHKA RERLEDDTEI  300
KENISSTGED VLPAEASSGT CDFEAQNPDI FADHSPPPHV TSRCLDTNEV VEGDTVSGYD  360
FDTDQYIERQ ASRGHNRRRI MAARWQGLPK SQWAKANGSH AGQNSQMSKL GVIQKHGTNR  420
DQRAAPIVNG SKVWSRKPKP ETNGVVLKAK LQKEPDKGKS HEVLIGSVSV SLDYCSSHSQ  480
GNLVAAQRDC VVENLAKQNT AQEKPVKHDS FQGSNGRLTV KLWRPVSQLG TKDPLPLQNG  540
ETEADVINGK YDQNLSGQSS LRLCSIDGSD IGFEDNFSHT GAKVDSESLR LTSHAAKAFL  600
AQRWKEAISS NHVKLVVTPD CQSSNADRFN ILANTENRLP ATSGVAKSKP KTKPEKGMKI  660
KYIPKQKEAT *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1275282ERKRQKKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.161170.0cotyledon| flower| hypocotyl| leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G233400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-145AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014618835.10.0uncharacterized protein LOC100799153
RefseqXP_028185431.10.0uncharacterized protein LOC114372182
TrEMBLA0A0B2QNN80.0A0A0B2QNN8_GLYSO; Uncharacterized protein
TrEMBLI1LDP30.0I1LDP3_SOYBN; Uncharacterized protein
STRINGGLYMA10G37780.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45172739
Representative plantOGRP36431115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25610.11e-151C2H2-like zinc finger protein