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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.10G230700.1.p | ||||||||
Common Name | GLYMA_10G230700, LOC100794389 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB_related | ||||||||
Protein Properties | Length: 313aa MW: 34753.5 Da PI: 9.7069 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 38.6 | 2.5e-12 | 54 | 98 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+ E++++++a +++ + Wk+I + +g +t q++s+ qky Glyma.10G230700.1.p 54 RESWTEPEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 98 789*****************77.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.07E-16 | 48 | 104 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.18 | 49 | 103 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 1.5E-18 | 52 | 101 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 6.3E-6 | 52 | 104 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.5E-10 | 53 | 101 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.5E-10 | 54 | 98 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.17E-7 | 56 | 99 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence Send to blast |
MVSKNPNPSE ALNLDPSGMS LPGILPFAAA AAAAVSFEDP AKKTRKPYTI TKSRESWTEP 60 EHDKFLEALQ LFDRDWKKIE AFVGSKTVIQ IRSHAQKYFL KVQKSGTSEH LPPPRPKRKA 120 VHPYPQKASK NVPVLSQVSG SFQSSSALLE PGYILKHDSS AMPKTSIIDT TVSSWSNNYL 180 QKTTNVLHGQ KQKVNNCCSS SESPRAQLVG ESNGRGNNSH PLRVLPDFAE VYNFIGSVFD 240 PNITGHVQKL KRMDPIDVET VLLLMRNLSI NLASPDFEDH RRLLASYEVE PEVDKYINAD 300 RTMLDVRLKS AT* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.36498 | 0.0 | seed coat |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.10G230700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006589522.1 | 0.0 | protein REVEILLE 6 isoform X1 | ||||
Refseq | XP_028183079.1 | 0.0 | protein REVEILLE 6-like isoform X1 | ||||
Swissprot | Q8H0W3 | 1e-118 | RVE6_ARATH; Protein REVEILLE 6 | ||||
TrEMBL | A0A445IRM6 | 0.0 | A0A445IRM6_GLYSO; Protein REVEILLE 6 isoform A | ||||
TrEMBL | K7LKZ8 | 0.0 | K7LKZ8_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA10G37520.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1119 | 33 | 96 |
Representative plant | OGRP928 | 15 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52660.1 | 1e-113 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.10G230700.1.p |
Entrez Gene | 100794389 |
Publications ? help Back to Top | |||
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