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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.10G223200.1.p | ||||||||
Common Name | GLYMA_10G223200, LOC100777915 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 274aa MW: 29056.2 Da PI: 8.8601 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.6 | 9.7e-21 | 61 | 111 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +g+W+AeIrdp + +r++lg+f+tae Aa+a+++a+++++g+ Glyma.10G223200.1.p 61 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALRFRGN 111 7********.**********7.....337*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 4.3E-33 | 61 | 119 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.54E-23 | 61 | 119 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 6.8E-39 | 61 | 124 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.712 | 61 | 118 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.9E-14 | 61 | 110 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.6E-12 | 62 | 73 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.53E-14 | 69 | 119 | No hit | No description |
PRINTS | PR00367 | 5.6E-12 | 84 | 100 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 274 aa Download sequence Send to blast |
MMSRFMNAPS SPGLSPLFGV GHKRAREDDT GAGASVGLGV VAAASSQTQG NESGGGERRR 60 RYRGVRQRPW GKWAAEIRDP HKAARVWLGT FDTAEAAARA YDEAALRFRG NRAKLNFPEN 120 VVQVQPPPPL PNLPASAVAG SGSGSVVTGF APTVMQGTRF QDSSDFLRDY WGYSQLLRST 180 GEFHGLDHWF FDSQMAAFQS SLPSSLLPSP PPPAFLPSSA SYPLFSSSQQ MGIFRPPGEQ 240 GHGGEDGGSG SGFTELLPST WSDTSGYPPP PPG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-22 | 60 | 121 | 4 | 66 | ATERF1 |
3gcc_A | 1e-22 | 60 | 121 | 4 | 66 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 56 | 61 | ERRRRY |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.50762 | 0.0 | flower| hypocotyl |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.10G223200.1.p |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP011822 | 0.0 | AP011822.1 Glycine max DNA, BAC clone: WBb35C13, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006589489.1 | 0.0 | ethylene-responsive transcription factor ERF110 | ||||
Refseq | XP_014618826.1 | 0.0 | ethylene-responsive transcription factor ERF110 | ||||
Refseq | XP_025979940.1 | 0.0 | ethylene-responsive transcription factor ERF110 | ||||
Refseq | XP_028183340.1 | 0.0 | ethylene-responsive transcription factor ERF110-like | ||||
Refseq | XP_028183341.1 | 0.0 | ethylene-responsive transcription factor ERF110-like | ||||
TrEMBL | A0A445IR76 | 0.0 | A0A445IR76_GLYSO; Ethylene-responsive transcription factor ERF114 | ||||
STRING | GLYMA10G36760.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4919 | 32 | 53 |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50080.1 | 9e-11 | ethylene response factor 110 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.10G223200.1.p |
Entrez Gene | 100777915 |