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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.10G219000.1.p | ||||||||
Common Name | GLYMA_10G219000, LOC100816937 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 158aa MW: 17542 Da PI: 8.039 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.6 | 4.9e-16 | 36 | 78 | 3 | 49 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaa 49 y GVr ++ +gr++AeIr p++ + r++lg+f+taeeAa a++ Glyma.10G219000.1.p 36 YLGVRKRP-WGRYAAEIRNPYT---KERHWLGTFDTAEEAAIAYDLS 78 77******.**********865...5******************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 2.7E-28 | 35 | 98 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.83E-20 | 35 | 93 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 20.152 | 35 | 92 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-26 | 35 | 92 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.51E-28 | 36 | 91 | No hit | No description |
PRINTS | PR00367 | 6.4E-9 | 36 | 47 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.1E-9 | 37 | 77 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.4E-9 | 58 | 74 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 158 aa Download sequence Send to blast |
MSQTTAQVSK TKPMENLSPL IYKNPIRRTS RRSTMYLGVR KRPWGRYAAE IRNPYTKERH 60 WLGTFDTAEE AAIAYDLSSI KICGINARTN FHYPFVSLPP LPMSSLPPPP PPPTPELDPS 120 VEVCLEMMNA ASYDGDDESL VIASILQSFS NSGNCSF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-15 | 32 | 91 | 2 | 62 | ATERF1 |
3gcc_A | 2e-15 | 32 | 91 | 2 | 62 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.10G219000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP011810 | 0.0 | AP011810.1 Glycine max DNA, BAC clone: MiB039C03, complete sequence. | |||
GenBank | AP011813 | 0.0 | AP011813.1 Glycine max DNA, BAC clone: MiB319A04, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025980041.1 | 1e-114 | ethylene-responsive transcription factor LEP | ||||
Refseq | XP_028184202.1 | 1e-114 | ethylene-responsive transcription factor LEP-like | ||||
TrEMBL | A0A445IR37 | 1e-113 | A0A445IR37_GLYSO; Ethylene-responsive transcription factor ERF088 | ||||
TrEMBL | K7LKS6 | 1e-113 | K7LKS6_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA10G36300.2 | 1e-113 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14513 | 13 | 17 |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12890.1 | 4e-29 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.10G219000.1.p |
Entrez Gene | 100816937 |