PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G212600.3.p
Common NameGLYMA_10G212600
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 1475aa    MW: 160644 Da    PI: 5.4294
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G212600.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.31.8e-08608649346
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          +WT+eE e +++ ++ +G++ +++Ia+ +  ++t  +c+++++k
  Glyma.10G212600.3.p 608 PWTPEEREVFLEKFAAFGKD-FRKIASFFD-HKTTADCVEFYYK 649
                          8*****************99.*********.***********98 PP
2Myb_DNA-binding331.4e-10796835344
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                           WT +E   +++av  +G++ +++Iar++g +R+ +qck ++
  Glyma.10G212600.3.p 796 DWTDDEKTAFLRAVSSFGKD-FAKIARCVG-TRSQEQCKVFF 835
                          5*****************99.*********.********766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.14E-14592652IPR009057Homeodomain-like
PROSITE profilePS5129315.95604655IPR017884SANT domain
SMARTSM007179.4E-9605653IPR001005SANT/Myb domain
PfamPF002493.8E-6607649IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-5608649IPR009057Homeodomain-like
PROSITE profilePS5129312.723792843IPR017884SANT domain
SMARTSM007172.7E-8793841IPR001005SANT/Myb domain
SuperFamilySSF466891.01E-9794843IPR009057Homeodomain-like
PfamPF002498.6E-9796835IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-6796835IPR009057Homeodomain-like
CDDcd001671.05E-7797835No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1475 aa     Download sequence    Send to blast
MTRGPRSDRD NSLGDWKPLK WTRSGSLSSR GSGFSHSSSS RSMGGADSHE VKAELLPKSV  60
AANESHSGEA AACATSSVPS EDTTSRKKPR LGWGEGLAKY EKKKVEVPDA SANKEGPVLS  120
TSNTEPCNLL SPSLVDKSPK LLGFSECASP ATPSSVACSS SPGMDDKLFG KTANVDNYAS  180
NLTGSPAPVS ESHFARFSFN LEKFDIDSLN NLGSSIIELV QSDDPTSLDS GPMRSNSINK  240
LLIWKADISK VLEMTESEID LLENELKSLK SESGETCPCP CPVTLGSQMV GSDEKSCEEH  300
VGVSDQVIRP VPLKIVDDPN TEKMPLSTNL HSIHENGKEE DIDSPGTATS KFVEPLPLIK  360
AVSCDTRGHD NFSRDLDTVL STAVKCLVPC TTRKEASVPA CVDGNISMEL KDSMDILYKT  420
IISSNKESAN RASEVFDKLW PKDCCKIEKM EASSDACTHT FIMEKFAERK QFARFKERVI  480
ALKFRALHHL WKEDMRLLSI RKCRPKSHKK NELSVRSTCN GIQKNRSSIR SRFPFPAGNQ  540
LSLVSTSEII NFTSKLLSES QVKVQRNTLK MPALILDEKE KMISKFVSSN GLVEDPLAIE  600
KERTMINPWT PEEREVFLEK FAAFGKDFRK IASFFDHKTT ADCVEFYYKN HKSDCFEKIK  660
KQDGDKLGKS YSAKTDLIAS GNKKLRAGSS LLGGYGKVKT YRGEDFIEKS SSFDILGDER  720
ETAAAADVLA GICGSLSSEA MSSCITSSVD PVEGNRDRKF LKVNPLCKLP MTPDVTQDVD  780
DETCSDESCG EMDPTDWTDD EKTAFLRAVS SFGKDFAKIA RCVGTRSQEQ CKVFFSKGRK  840
CLGLDLMRPI PENVGSPVND DANGGESDTD DACVVETGSV VETDKSGTKT DEDLHLYGTN  900
TYHDESHPVE ARNLSAELNE SKEINWTEVD LEDANVTSGA CQINIDSKQG CDGSEVFLCG  960
SNKSGSVGER ADIIMSDSTE VENDKANKLG GAATELISAP NTREPCQSNS IAEDRMVVSE  1020
VSSGGLGNEL ERHRVSSTLC VDDRDNKHEA DSGVIVDMKS SVHDLSTMIN SSISSLGNSC  1080
SGLSFSSENK HVPLGNPRVS ALSMDNLHAL LQNTVAVDVQ CEKTASQDQM SSTCDIRGGR  1140
DMHCQNSISN GDHQHITGNL SDHVDAVSIL QGYPLQVPVK KEMDSDMNCT SSATELPLLP  1200
QKIEHDDDHI KAFQSSDSDK TFRNGDVKLF GKILTNPSTT QKPNVGAKGS EENGTHHPKL  1260
SSKSSNPKIT GHHSADGNLK ILKFDHNDYV GLENVPMRSY GYWDGNRIQT GLSTLPDSAI  1320
LLAKYPAAFS NYLTSSAKLE QPSLQTYSKN NERLLNGAST FTTRDINGSN ALIDYQMFRR  1380
DGPKVQPFMV DVKHCQDVFS EMQRRNGFEA ISSLQQQSRG MNGVGRPGIL VGGSCSGVSD  1440
PVAAIKMHYS NSDKYGGQTG SIAREDESWG GKGD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4a69_C1e-16566657494NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D1e-16566657494NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.66190.0cotyledon| flower| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G212600.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006589438.10.0uncharacterized protein LOC100806246 isoform X5
TrEMBLA0A0R0I1E10.0A0A0R0I1E1_SOYBN; Uncharacterized protein
STRINGGLYMA10G35671.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52250.11e-151MYB family protein