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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.10G212600.1.p | ||||||||
Common Name | GLYMA_10G212600, LOC100806246 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB | ||||||||
Protein Properties | Length: 1652aa MW: 181032 Da PI: 5.9196 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.1 | 2e-08 | 785 | 826 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT+eE e +++ ++ +G++ +++Ia+ + ++t +c+++++k Glyma.10G212600.1.p 785 PWTPEEREVFLEKFAAFGKD-FRKIASFFD-HKTTADCVEFYYK 826 8*****************99.*********.***********98 PP | |||||||
2 | Myb_DNA-binding | 32.8 | 1.6e-10 | 973 | 1012 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 WT +E +++av +G++ +++Iar++g +R+ +qck ++ Glyma.10G212600.1.p 973 DWTDDEKTAFLRAVSSFGKD-FAKIARCVG-TRSQEQCKVFF 1012 5*****************99.*********.********766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.51E-14 | 769 | 829 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 15.95 | 781 | 832 | IPR017884 | SANT domain |
SMART | SM00717 | 9.4E-9 | 782 | 830 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.3E-6 | 784 | 826 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-5 | 785 | 826 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 12.723 | 969 | 1020 | IPR017884 | SANT domain |
SMART | SM00717 | 2.7E-8 | 970 | 1018 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.17E-9 | 971 | 1020 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.1E-6 | 973 | 1012 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 9.8E-9 | 973 | 1012 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.20E-7 | 974 | 1012 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1652 aa Download sequence Send to blast |
MPPEPLPWDR KDFFKERKHE RSESLGSVAR WRDSSHHRDF NRWGSAEFRR PPGHGKQGGW 60 HLFSEEPGHG YAISRSSSDK MLEDDSRPSI SRGDGKYGRS SRENRGGPFG QRDWRGHSWE 120 PNNGSMNFPR RLQDVNNDQR SVDDALAYSS HPHSDFGNAW DQHHLKDQHD KMGGVNMFGT 180 GPRSDRDNSL GDWKPLKWTR SGSLSSRGSG FSHSSSSRSM GGADSHEVKA ELLPKSVAAN 240 ESHSGEAAAC ATSSVPSEDT TSRKKPRLGW GEGLAKYEKK KVEVPDASAN KEGPVLSTSN 300 TEPCNLLSPS LVDKSPKLLG FSECASPATP SSVACSSSPG MDDKLFGKTA NVDNYASNLT 360 GSPAPVSESH FARFSFNLEK FDIDSLNNLG SSIIELVQSD DPTSLDSGPM RSNSINKLLI 420 WKADISKVLE MTESEIDLLE NELKSLKSES GETCPCPCPV TLGSQMVGSD EKSCEEHVGV 480 SDQVIRPVPL KIVDDPNTEK MPLSTNLHSI HENGKEEDID SPGTATSKFV EPLPLIKAVS 540 CDTRGHDNFS RDLDTVLSTA VKCLVPCTTR KEASVPACVD GNISMELKDS MDILYKTIIS 600 SNKESANRAS EVFDKLWPKD CCKIEKMEAS SDACTHTFIM EKFAERKQFA RFKERVIALK 660 FRALHHLWKE DMRLLSIRKC RPKSHKKNEL SVRSTCNGIQ KNRSSIRSRF PFPAGNQLSL 720 VSTSEIINFT SKLLSESQVK VQRNTLKMPA LILDEKEKMI SKFVSSNGLV EDPLAIEKER 780 TMINPWTPEE REVFLEKFAA FGKDFRKIAS FFDHKTTADC VEFYYKNHKS DCFEKIKKQD 840 GDKLGKSYSA KTDLIASGNK KLRAGSSLLG GYGKVKTYRG EDFIEKSSSF DILGDERETA 900 AAADVLAGIC GSLSSEAMSS CITSSVDPVE GNRDRKFLKV NPLCKLPMTP DVTQDVDDET 960 CSDESCGEMD PTDWTDDEKT AFLRAVSSFG KDFAKIARCV GTRSQEQCKV FFSKGRKCLG 1020 LDLMRPIPEN VGSPVNDDAN GGESDTDDAC VVETGSVVET DKSGTKTDED LHLYGTNTYH 1080 DESHPVEARN LSAELNESKE INWTEVDLED ANVTSGACQI NIDSKQGCDG SEVFLCGSNK 1140 SGSVGERADI IMSDSTEVEN DKANKLGGAA TELISAPNTR EPCQSNSIAE DRMVVSEVSS 1200 GGLGNELERH RVSSTLCVDD RDNKHEADSG VIVDMKSSVH DLSTMINSSI SSLGNSCSGL 1260 SFSSENKHVP LGNPRVSALS MDNLHALLQN TVAVDVQCEK TASQDQMSST CDIRGGRDMH 1320 CQNSISNGDH QHITGNLSDH VDAVSILQGY PLQVPVKKEM DSDMNCTSSA TELPLLPQKI 1380 EHDDDHIKAF QSSDSDKTFR NGDVKLFGKI LTNPSTTQKP NVGAKGSEEN GTHHPKLSSK 1440 SSNPKITGHH SADGNLKILK FDHNDYVGLE NVPMRSYGYW DGNRIQTGLS TLPDSAILLA 1500 KYPAAFSNYL TSSAKLEQPS LQTYSKNNER LLNGASTFTT RDINGSNALI DYQMFRRDGP 1560 KVQPFMVDVK HCQDVFSEMQ RRNGFEAISS LQQQSRGMNG VGRPGILVGG SCSGVSDPVA 1620 AIKMHYSNSD KYGGQTGSIA REDESWGGKG D* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4a69_C | 2e-16 | 743 | 834 | 4 | 94 | NUCLEAR RECEPTOR COREPRESSOR 2 |
4a69_D | 2e-16 | 743 | 834 | 4 | 94 | NUCLEAR RECEPTOR COREPRESSOR 2 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.6619 | 0.0 | cotyledon| flower| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.10G212600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006589438.1 | 0.0 | uncharacterized protein LOC100806246 isoform X5 | ||||
TrEMBL | K7LKN0 | 0.0 | K7LKN0_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA10G35671.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4986 | 33 | 52 |
Representative plant | OGRP3215 | 17 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52250.1 | 1e-172 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.10G212600.1.p |
Entrez Gene | 100806246 |