PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G209600.1.p
Common NameGLYMA_10G209600, LOC100799861
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 1538aa    MW: 171578 Da    PI: 6.8766
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G209600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.0004514221447123
                           EEET..TTTEEESSHHHHHHHHHH.T CS
              zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt.H 23  
                           +kC    C +sF++k +L  H r+ +
  Glyma.10G209600.1.p 1422 HKCDldGCQMSFKTKAELLLHKRNlC 1447
                           799999****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005452.6E-121555IPR003349JmjN domain
PROSITE profilePS5118313.731657IPR003349JmjN domain
PfamPF023753.0E-151750IPR003349JmjN domain
SMARTSM005586.5E-46293462IPR003347JmjC domain
PROSITE profilePS5118434.132293462IPR003347JmjC domain
SuperFamilySSF511972.06E-26293459No hitNo description
PfamPF023733.7E-36326445IPR003347JmjC domain
Gene3DG3DSA:3.30.160.604.2E-414131444IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003558.814221444IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.0514451474IPR007087Zinc finger, C2H2
SMARTSM003550.6714451469IPR015880Zinc finger, C2H2-like
SuperFamilySSF576678.36E-614461482No hitNo description
PROSITE patternPS00028014471469IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.6E-514471473IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene3DG3DSA:3.30.160.601.9E-1014741499IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.0314751504IPR007087Zinc finger, C2H2
SMARTSM003550.001614751499IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028014771499IPR007087Zinc finger, C2H2
SuperFamilySSF576671.02E-1014851535No hitNo description
Gene3DG3DSA:3.30.160.601.6E-1015001528IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.26315051536IPR007087Zinc finger, C2H2
SMARTSM003550.6615051531IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028015071531IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1538 aa     Download sequence    Send to blast
MGSVEIPNWL KGLPLAPEFR PTDTEFADPI AYISKIEKEA ANFGICKIIP PFPKPSKKYV  60
FSNLNRSLLK CPDFGPDNSS LGVCNSSKTS SGDGSSDGVL RAVFTTRHQE LGQSQSVKKA  120
KGTVQNPLSG VHKQVWQSGE AYTLEQFESK SKSFAKSVLG SVKDVSPLVI ESMFWKATLE  180
KPIYVEYAND VPGSAFEESK GQFHYSHRRQ RKRTYYKSRL DSSDCKQTET GCVRDTQTDE  240
TKVASVQSHS DTCLQMAKSS TTVSTFSSND DSQSSKEKSS DASNEMQGTA GWKLSNSPWN  300
LQVIARSSGS LTRFMPDDIP GVTSPMVYIG MLFSWFAWHV EDHELHSMNF LHTGSSKTWY  360
AVPGDYAFAF EEVIRTEGYS GNIDHLAALK LLGEKTTLLS PEVIVASGIP CCRLTQHPGE  420
FVVTFPRAYH VGFSHGFNCG EAANFGTPQW LRVAKEAAVR RAAMNYLPML SHQQLLYLLT  480
MSFISRVPRT LLPGVRSSRL RDRQKEEREF LVKQAFIEDM LQENKLLSIL LGKEATKKAV  540
LWNADLLPDS SKDFQLPDLT STTGSSMAHM SNISSAEKSG HYLLDEMSLY MENLTNLDLG  600
GDDLPCHFQT DSGALACVGC GILGFPFMTV IQPTEKLIME LLPDNHLVQV SSPDSTACVH  660
SSISRDLSVS ELSSVKELPD QSLNKCNKCW NTSSKFLRPR IFCLEHAVQI FEMLQSKGGA  720
NVLIICHSDY QKIKAHARAV AEEIHSAFDY NEVPLDTASP ENLTLIDLAI DGEEHDECED  780
WTSKLGINLR NCVHARNNSP SKQVPWILGT LLYDKCLASK SLALNWQSRR SRSKRSSCLA  840
QTKPCDSIER KKEDRFYGRI DDSPAEKKLL QYSRRKFKSK QRCFPVASMV SEFQEKSKNL  900
SATLNGDHNN CFSKTDLEAK NFRSDYALSC VSASTKMSPI HPEIQIAEMP ASTRLNDAKP  960
QPSNSIPDHT LMTEEVGAEI EKQTIQESDV DRNNDLTLGH SKMHCNTSVS EICGKESQGC  1020
QDKKCSSSLT NATDRNIEMI RISEITEAII IDSRCNSLIL NGEGHQEYQS TCKSNNEEAA  1080
LSPASLVNQS TLASVVGSFG SPNNNYTAEK ISSPIFLEKT TEEEIDSLSE RDKEPLIDDR  1140
PISEHTLKEV CEVQRELYAS ADLHNTIVLD YEMQHETQGG KDSRKEINQS TLVSTITRGE  1200
YAEGLNDEVI PKSVEQCQIE NMNKINVEPV SSYVAKGENK CVTSSELGCS EVLVETYPKD  1260
SCIQLISDKE KETEIQSVSI IDEEFCSGTD TSIDDSSSIQ ECSKIEKESC VTENINGIKA  1320
NLSKDNRELE SCELTTAVPR SNARKNKKRK VKNTTKNQSN IDNFIRSPCE GLRPRAGKIA  1380
TDKSGVEINQ VDKENQVAKR ARRSSEGLVP HKNKKDDVKK PHKCDLDGCQ MSFKTKAELL  1440
LHKRNLCPHE GCGKKFSSHK YALLHQRVHD DERPLKCPWK GCSMSFKWAW ARTEHIRVHT  1500
GEKPYHCKVE GCGLSFRFVS DFSRHRRKTG HHVKPPA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A7e-54276476137346Transcription factor jumonji (Jmj) family protein
6ip4_A7e-54276476137346Arabidopsis JMJ13
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1829834RSRSKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.625470.0somatic embryo
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed at low levels in cotyledons and leaves. Detected in inflorescences, stems, roots and siliques but not in shoot apical meristems or root tips. {ECO:0000269|PubMed:15377760, ECO:0000269|PubMed:18713399}.
Functional Description ? help Back to Top
Source Description
UniProtActs probably as a histone 'Lys-4' (H3K4me) demethylase. Involved in transcriptional gene regulation. Acts as a repressor of the photoperiodic flowering pathway and of FT. Binds around the transcription start site of the FT locus. {ECO:0000269|PubMed:15377760, ECO:0000269|PubMed:18467490, ECO:0000269|PubMed:19946624}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G209600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006589417.10.0probable lysine-specific demethylase ELF6
RefseqXP_028182376.10.0probable lysine-specific demethylase ELF6
SwissprotQ6BDA00.0ELF6_ARATH; Probable lysine-specific demethylase ELF6
TrEMBLA0A445IQH90.0A0A445IQH9_GLYSO; Putative lysine-specific demethylase ELF6 isoform A
TrEMBLI1LCZ60.0I1LCZ6_SOYBN; Uncharacterized protein
STRINGGLYMA10G35350.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80313034
Representative plantOGRP75061114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.10.0C2H2 family protein
Publications ? help Back to Top
  1. Heidari B,Nemie-Feyissa D,Kangasjärvi S,Lillo C
    Antagonistic regulation of flowering time through distinct regulatory subunits of protein phosphatase 2A.
    PLoS ONE, 2013. 8(7): p. e67987
    [PMID:23976921]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Crevillén P, et al.
    Epigenetic reprogramming that prevents transgenerational inheritance of the vernalized state.
    Nature, 2014. 515(7528): p. 587-90
    [PMID:25219852]
  4. Yang H,Howard M,Dean C
    Physical coupling of activation and derepression activities to maintain an active transcriptional state at FLC.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(33): p. 9369-74
    [PMID:27482092]