PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.10G206600.1.p | ||||||||
Common Name | GLYMA_10G206600, LOC100795090 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | C2H2 | ||||||||
Protein Properties | Length: 556aa MW: 60629.2 Da PI: 9.0155 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.3 | 2.8e-05 | 66 | 88 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H Glyma.10G206600.1.p 66 FICEVCNKGFQREQNLQLHRRGH 88 89*******************88 PP | |||||||
2 | zf-C2H2 | 12.6 | 0.00042 | 142 | 164 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ Glyma.10G206600.1.p 142 WKCEKCSKKYAVQSDWKAHSKTC 164 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 6.1E-6 | 65 | 88 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 5.09E-7 | 65 | 88 | No hit | No description |
SMART | SM00355 | 0.0052 | 66 | 88 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12171 | 2.7E-5 | 66 | 88 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE profile | PS50157 | 10.99 | 66 | 88 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 68 | 88 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 110 | 107 | 137 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 5.1E-5 | 130 | 163 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 5.09E-7 | 137 | 162 | No hit | No description |
SMART | SM00355 | 140 | 142 | 162 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 556 aa Download sequence Send to blast |
MAAASSSTPF LGIREESPQI TTHHQPSTVS PTTAPQKKRR NQPGTPYPDA EVIKLSPKTL 60 MATNRFICEV CNKGFQREQN LQLHRRGHNL PWKLKQKSTK EQKRKVYLCP EPTCVHHDPS 120 RALGDLTGIK KHYYRKHGEK KWKCEKCSKK YAVQSDWKAH SKTCGTREYR CDCGTLFSRR 180 DSFITHRAFC DALAQESARF PGGLNPLGTH LFGTNHTTSL SLSQVGNQLS QVQKQNQTAT 240 NYNSILRLGN NNVGAAATKF EHLIPPLNHS SFGHSPQSMP SSAFFMNDNT NQALFEEHQS 300 QLQGLMQLQD LQGNTNNSDS SSVGPPNSNL FNLSFFPISS NIGTGTIIPG QFNNISGSNQ 360 GTTTTTTTTL YGNSIENESS PHAGSSFSSI FGNSIENASS SHMSATALLQ QAAQMGSTTT 420 TTTNNGSSLL GGMCTNNSSK AENDHHHNLQ GLMNSIANGN TSLFGSMQGN ENNLCGFHNV 480 DESNNNKLPQ NLSVNFGGSD KLTLDFLGVG GMMTNMSGGF SQREQQQHVT GTMSSLDHDL 540 KSAQSYRHFG KSTLQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 2e-34 | 138 | 199 | 3 | 64 | Zinc finger protein JACKDAW |
5b3h_F | 2e-34 | 138 | 199 | 3 | 64 | Zinc finger protein JACKDAW |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.27436 | 0.0 | cotyledon| seed coat |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000305|PubMed:19726569}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.10G206600.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by gibberellin. {ECO:0000305|PubMed:17933900}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003535516.1 | 0.0 | protein indeterminate-domain 4, chloroplastic | ||||
Refseq | XP_006589397.1 | 0.0 | protein indeterminate-domain 4, chloroplastic | ||||
Refseq | XP_028184488.1 | 0.0 | protein indeterminate-domain 4, chloroplastic-like | ||||
Refseq | XP_028184489.1 | 0.0 | protein indeterminate-domain 4, chloroplastic-like | ||||
Swissprot | Q8GYC1 | 1e-132 | IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic | ||||
TrEMBL | A0A445IQ80 | 0.0 | A0A445IQ80_GLYSO; Protein indeterminate-domain 4, chloroplastic isoform A | ||||
TrEMBL | K7LKK1 | 0.0 | K7LKK1_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA10G35070.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1536 | 33 | 97 | Representative plant | OGRP95 | 16 | 242 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02080.1 | 1e-106 | indeterminate(ID)-domain 4 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.10G206600.1.p |
Entrez Gene | 100795090 |
Publications ? help Back to Top | |||
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