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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Glyma.10G204400.1.p |
| Common Name | GLYMA_10G204400, LOC732601, RAV |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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| Family |
RAV |
| Protein Properties |
Length: 352aa MW: 38379.3 Da PI: 8.0431 |
| Description |
RAV family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.10G204400.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 44.5 | 3.8e-14 | 52 | 100 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
s+ykGV + +grW A+I++ ++r++lg+f ++eAa+a++ a+++++g
Glyma.10G204400.1.p 52 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAARAYDIAALRFRG 100
89****9888.8*********3.....5**********99*************98 PP
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| 2 | B3 | 93.4 | 1.6e-29 | 172 | 269 | 1 | 83 |
EEEE-..-HHHHTT-EE--HHH.HTT...............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT-- CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk 75
f+k+ tpsdv+k++rlv+pk++ae+h g + ++++ l +ed g++W+++++y+++s++yvltkGW++Fvk+++L+
Glyma.10G204400.1.p 172 FEKTVTPSDVGKLNRLVIPKQHAEKHfplsgsgdesspcvaGASAAKGMLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLR 261
99*****************************999999999877888******************************************** PP
TT-EEEEE CS
B3 76 egDfvvFk 83
+gD v F
Glyma.10G204400.1.p 262 AGDAVQFF 269
*****986 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 352 aa
Download sequence Send
to blast |
MDGGCVTDET TTSSDSLSVP PPSRVGSVAS AVVDPDGCCV SGEAESRKLP SSKYKGVVPQ 60
PNGRWGAQIY EKHQRVWLGT FNEEDEAARA YDIAALRFRG PDAVTNFKPP AASDDAESEF 120
LNSHSKFEIV DMLRKHTYDD ELQQSTRGGR RRLDADTASS GVFDAKAREQ LFEKTVTPSD 180
VGKLNRLVIP KQHAEKHFPL SGSGDESSPC VAGASAAKGM LLNFEDVGGK VWRFRYSYWN 240
SSQSYVLTKG WSRFVKEKNL RAGDAVQFFK STGPDRQLYI DCKARSGEVN NNAGGLFVPI 300
GPVVEPVQMV RLFGVNLLKL PVPGSDGVGK RKEMELFAFE CCKKLKVIGA L*
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| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 329 | 345 | KRKEMELFAFECCKKLK |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269|PubMed:18718758}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences. Functionally redundant with TEM2. {ECO:0000269|PubMed:18718758}. |
| Function -- GeneRIF ? help
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- RAV-like DNA-binding protein may be a negative regulator acting on both photosynthesis and growth.
[PMID: 18297307] - GmRAV was inferred to play a key role in cytokinin and photoperiod signalling that subsequently regulated plant development.
[PMID: 22389516] - GmRAV was inferred to have a fundamental function in photoperiod, darkness, and sucrose signaling responses to regulate plant development and flowering induction.[GmRAV]
[PMID: 24551235]
|
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Expressed with a circadian rhythm showing a peak at dawn. {ECO:0000269|PubMed:18718758}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | DQ147914 | 0.0 | DQ147914.1 Glycine max RAV-like DNA-binding protein (RAV) mRNA, complete cds. |
| Publications
? help Back to Top |
- Zhao L,Luo Q,Yang C,Han Y,Li W
A RAV-like transcription factor controls photosynthesis and senescence in soybean.
Planta, 2008. 227(6): p. 1389-99
[PMID:18297307] - Zhao L, et al.
Roles for a soybean RAV-like orthologue in shoot regeneration and photoperiodicity inferred from transgenic plants.
J. Exp. Bot., 2012. 63(8): p. 3257-70
[PMID:22389516] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Choi D, et al.
iNID: an analytical framework for identifying network models for interplays among developmental signaling in Arabidopsis.
Mol Plant, 2014. 7(5): p. 792-813
[PMID:24380880] - Sgamma T,Jackson A,Muleo R,Thomas B,Massiah A
TEMPRANILLO is a regulator of juvenility in plants.
Sci Rep, 2014. 4: p. 3704
[PMID:24424565] - Lu Q, et al.
A GmRAV ortholog is involved in photoperiod and sucrose control of flowering time in soybean.
PLoS ONE, 2014. 9(2): p. e89145
[PMID:24551235] - Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
RAV genes: regulation of floral induction and beyond.
Ann. Bot., 2014. 114(7): p. 1459-70
[PMID:24812253] - Marín-González E, et al.
SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
Plant Physiol., 2015. 169(2): p. 1214-24
[PMID:26243615] - Matías-Hernández L, et al.
TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation.
Plant Physiol., 2016. 170(3): p. 1624-39
[PMID:26802039]
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