PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G204300.1.p
Common NameGLYMA_10G204300, LOC100788243
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 274aa    MW: 30949.9 Da    PI: 8.7145
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G204300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.3e-05109128120
                          EEETTTTEEESSHHHHHHHH CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                          ++C+ C+k+F+r  n++ H+
  Glyma.10G204300.1.p 109 FSCTVCNKTFNRFNNMQMHM 128
                          89*****************9 PP
2zf-C2H213.70.00018194216123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C +C+k+F  + + ++H +++
  Glyma.10G204300.1.p 194 FECRKCHKPFAVRGDWRTHEKNC 216
                          89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.96E-692131No hitNo description
SMARTSM003550.15109131IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.201109136IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.7E-5109128IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280111131IPR007087Zinc finger, C2H2
SMARTSM0035581157189IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.26E-5179214No hitNo description
SMARTSM0035580194214IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MQKTYSFSFI SSSGSDSACY LEADEVDNED SISLSLAPPS QHQFKSKVSN PKHSSTMPDH  60
HQQNPDLISG VTVALHIGLP TTKPSSPTPI HCRYWIPTPQ QILIGPTQFS CTVCNKTFNR  120
FNNMQMHMWG HGSQYRKGAE SLRGSKAGSS MLRLPCYCCE EGCKNNINYP RSKPLKDFRT  180
LQTHYKRKHG GKPFECRKCH KPFAVRGDWR THEKNCGKLW FCVCGSDFKH KRSLKDHVRA  240
FGNGHAPHNL LSEERENEGG DDDDNEVVVF TFK*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G204300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-151AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003535504.10.0zinc finger protein WIP6
RefseqXP_028182761.10.0zinc finger protein WIP6-like
SwissprotQ9FX681e-110ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLA0A445IQA20.0A0A445IQA2_GLYSO; Zinc finger protein WIP6
TrEMBLK7LKI40.0K7LKI4_SOYBN; Uncharacterized protein
STRINGGLYMA10G34770.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Representative plantOGRP4101597
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.11e-112C2H2-like zinc finger protein