PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G201400.1.p
Common NameGLYMA_10G201400, LOC100791426
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family Trihelix
Protein Properties Length: 488aa    MW: 52664.1 Da    PI: 8.3842
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G201400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix58.12.2e-18100189186
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                          +W++  +  L+ea++e+ ++l+rg+l++ +Weev++++      e++ ++s +qCk+k++nl+kryk + ++ +++   ++s++ +f+++
  Glyma.10G201400.1.p 100 EWSDTAIAYLLEAYTEKFNQLNRGNLRGRDWEEVAEAVlercgGEGKHQKSVEQCKNKIDNLKKRYKVELQRIGSG-GIATSHWHWFKKI 188
                          5***************************************99999****************************999.556669*****99 PP

             trihelix  86 e 86 
                          e
  Glyma.10G201400.1.p 189 E 189
                          8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.9E-2098191No hitNo description
Gene3DG3DSA:3.40.1160.102.6E-74242479IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B34.336246480IPR015963Uridylate kinase, bacteria
SuperFamilySSF536331.96E-59247479IPR001048Aspartate/glutamate/uridylate kinase
PfamPF006964.3E-26250459IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042546.44E-125250480No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0046939Biological Processnucleotide phosphorylation
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MATEDYPLLD SPSHGQPHLH ASTRHHFPSS SSSSPTTLPA TAASGTATAD YYPHPSFSDD  60
SAKSNSKRAS AAGSPYYHNK RLKSAADPDP ATDYRKDREE WSDTAIAYLL EAYTEKFNQL  120
NRGNLRGRDW EEVAEAVLER CGGEGKHQKS VEQCKNKIDN LKKRYKVELQ RIGSGGIATS  180
HWHWFKKIEA IVGNSLSVKT VSDDDKAGSS GGGANSPSMA RQTKNRYAPS NATVATNLKP  240
KPASNLKWHR VLFKISGSAL AGNCQNIDPK VAMQIAREVA TACRLGVEVA IVVGGRNFFC  300
GDAWVSATGL DRPTAYQIGM MATVMNSILL QSALEKLGVQ ARVQSTFSMP EVAEPYSRQR  360
AIRHLEKGRV VIFGGVGAGT GNPLFTTDTA AALRASELNA DAVLKGTNVN GVFDCHPRND  420
NITLDHISFR EVVSRGVTSM DMMALAYCEE NGIPVVVFNV LEPGNVSRAL CGDQVGTLID  480
QTGRVEH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek5_A7e-672444795239Uridylate kinase
3ek5_B7e-672444795239Uridylate kinase
3ek5_C7e-672444795239Uridylate kinase
3ek5_D7e-672444795239Uridylate kinase
3ek5_E7e-672444795239Uridylate kinase
3ek5_F7e-672444795239Uridylate kinase
3ek6_A7e-672444795239Uridylate kinase
3ek6_B7e-672444795239Uridylate kinase
3ek6_C7e-672444795239Uridylate kinase
3ek6_D7e-672444795239Uridylate kinase
3ek6_E7e-672444795239Uridylate kinase
3ek6_F7e-672444795239Uridylate kinase
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.135390.0flower| root| seed coat
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G201400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006589367.10.0uncharacterized protein LOC100791426 isoform X1
RefseqXP_028183562.10.0uncharacterized protein LOC114370413 isoform X1
TrEMBLA0A445IQ440.0A0A445IQ44_GLYSO; Uridylate kinase isoform A
TrEMBLI1LCQ50.0I1LCQ5_SOYBN; Uncharacterized protein
STRINGGLYMA10G34520.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40623252
Representative plantOGRP61611218
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.11e-179Trihelix family protein