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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.10G197600.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | NAC | ||||||||
Protein Properties | Length: 324aa MW: 36591.3 Da PI: 4.094 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 103 | 3.9e-32 | 5 | 97 | 2 | 93 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 pGfrFhPtdeelvv+yLk+k++g+ + ++i+ vd+yk+ePwdLp +k+k+++ ewyfFs d+ky +g r+nrat++gyW++tg ++ Glyma.10G197600.3.p 5 GPGFRFHPTDEELVVFYLKRKMTGNLSRY-DHIAVVDVYKLEPWDLPslSKLKTKDLEWYFFSALDRKYGNGYRTNRATERGYWNQTGIEHF 95 59***********************9888.89***************5448888888*******************************9887 PP NAM 92 vl 93 v+ Glyma.10G197600.3.p 96 VH 97 76 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.83E-33 | 3 | 97 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 30.705 | 4 | 150 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.2E-15 | 6 | 94 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 324 aa Download sequence Send to blast |
MARMGPGFRF HPTDEELVVF YLKRKMTGNL SRYDHIAVVD VYKLEPWDLP SLSKLKTKDL 60 EWYFFSALDR KYGNGYRTNR ATERGYWNQT GIEHFVHADL FMYLSSFMRY VVLALELDWS 120 GIIDSDTLPS LNFHYGECSS HAEYSKVFIK DQEPLADTFE ISCPENVWPL DMTGQHGVGT 180 NSGEDGDSGE LSNIGNFDLS SNNMNLDLYW DANENLPMDD DGFLEYNDIA IGNGDNPTEA 240 DLSANAMLDE YAALADDDIY KYISFDSPQI QESENFIPNQ GSPFTQQNVE GETADRAVVS 300 NEGSSVQNTQ EAMLGIRKYK STC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-23 | 4 | 96 | 15 | 105 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.10G197600.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235336 | 1e-138 | AC235336.1 Glycine max strain Williams 82 clone GM_WBb0084A23, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003557100.2 | 1e-151 | uncharacterized protein LOC100786171 | ||||
TrEMBL | A0A368UHM6 | 0.0 | A0A368UHM6_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA1902S50.1 | 1e-151 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10490.1 | 7e-41 | NAC domain containing protein 52 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.10G197600.3.p |