PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G197200.1.p
Common NameGLYMA_10G197200, LOC100819786
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 357aa    MW: 39759.9 Da    PI: 6.9529
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G197200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.00085151173123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          y+C+ C+++F++   L  H  +H
  Glyma.10G197200.1.p 151 YECKTCNRTFPSFQALGGHRASH 173
                          99**********99999998887 PP
2zf-C2H2130.0003232254123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++Cg  F++   L  H+r+H
  Glyma.10G197200.1.p 232 HECSICGAEFTSGQALGGHMRRH 254
                          78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.97E-9150173No hitNo description
PfamPF139123.3E-13150175IPR007087Zinc finger, C2H2
SMARTSM003550.052151173IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.637151178IPR007087Zinc finger, C2H2
PROSITE patternPS000280153173IPR007087Zinc finger, C2H2
SuperFamilySSF576677.97E-9227254No hitNo description
PfamPF139125.3E-13231256IPR007087Zinc finger, C2H2
PROSITE profilePS501579.723232254IPR007087Zinc finger, C2H2
SMARTSM003550.01232254IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280234254IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MVSERTNMEA PEELSFGGSK DHTNIAKGKR TKRVRPQSPI PFSITANSST GGEKEEDCYN  60
VDDDNIIKNE DINNNNINNI NSTPTTSAEL QDITDEEEDM ANCLILLAQG QSRESPKHAE  120
EDAGMSYAKH NSRKFLEAAT LGSSRAGYYV YECKTCNRTF PSFQALGGHR ASHKKPKALM  180
AIGQKKKQQH LLSSDEEEFQ LKTNKSPFSI QLNTNGNLYS SSSNNNNKSK VHECSICGAE  240
FTSGQALGGH MRRHRAPVGT TPTATILSFT PLALEPEEDH PRKKRNVLNL DLDLNLPAPE  300
DDHRESKFAF ASKQQQQQHG QKQPQQHHHP EQKQQQPQQQ QTSLVFPVPA LVDCHY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G197200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006589351.20.0zinc finger protein ZAT5
TrEMBLI1LCM00.0I1LCM0_SOYBN; Uncharacterized protein
STRINGGLYMA10G34100.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Representative plantOGRP23501035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.12e-59C2H2 family protein