PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

ERF

Protein Properties

Length: 148aa MW: 16422 Da PI: 6.0219

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.10G187000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	63.4	4.9e-20	18	68	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrd + + +r++lg+f taeeAa+a+++a+ ++g Glyma.10G187000.1.p 18 RYRGVRRRP-WGKFAAEIRDSTR---QgQRVWLGTFNTAEEAARAYDRAAYTMRG 68 6******.******322...24***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	4.93E-16	18	77	No hit	No description
PROSITE profile	PS51032	23.696	18	76	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	9.5E-32	18	78	IPR001471	AP2/ERF domain
Pfam	PF00847	2.4E-15	18	68	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	3.47E-24	18	78	IPR016177	DNA-binding domain
SMART	SM00380	3.8E-33	18	81	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.4E-11	19	30	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.4E-11	42	58	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 148 aa Download sequence Send to blast
MDEEGSRGRA KEDAGDVRYR GVRRRPWGKF AAEIRDSTRQ GQRVWLGTFN TAEEAARAYD 60 RAAYTMRGPF AILNFPDEYP VTAAGATNAA TYSSASSSSS LASSSRHADV EARGRSEQGR 120 EVFEFEYLDD KLLEELLDCE NKKKRGP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	7e-35	3	146	2	128	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.10G187000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003535439.1	1e-104	ethylene-responsive transcription factor ERF096
Refseq	XP_028182486.1	1e-104	ethylene-responsive transcription factor ERF096-like
Swissprot	Q9LTC5	2e-41	ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBL	A0A445IPI0	1e-102	A0A445IPI0_GLYSO; Ethylene-responsive transcription factor ERF098
TrEMBL	I1LCB9	1e-102	I1LCB9_SOYBN; Uncharacterized protein
STRING	GLYMA10G33080.1	1e-103	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF270	33	215
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23220.1	1e-21	ERF family protein

Link Out ? help Back to Top
Phytozome	Glyma.10G187000.1.p
Entrez Gene	100794227

Publications ? help Back to Top
Van den Broeck L, et al. From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress. Mol. Syst. Biol., 2017. 13(12): p. 961 [PMID:29269383]