PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

ERF

Protein Properties

Length: 142aa MW: 15963.8 Da PI: 9.3979

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.10G186900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	68	1.8e-21	16	67	2	56
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +++GVr+++ +g+++AeIrdps++g r +lg+f+taeeAa+a+++a+ +l+g+ Glyma.10G186900.1.p 16 RFRGVRRRP-WGKYAAEIRDPSKQG--SRLWLGTFDTAEEAARAYDRAAFNLRGH 67 69*****.******98865..************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	1.35E-30	16	74	No hit	No description
SMART	SM00380	3.7E-38	16	80	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	24.592	16	74	IPR001471	AP2/ERF domain
Pfam	PF00847	3.6E-15	16	67	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	4.5E-32	16	75	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	8.5E-24	17	75	IPR016177	DNA-binding domain
PRINTS	PR00367	2.0E-11	17	28	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.0E-11	40	56	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 142 aa Download sequence Send to blast
MEEHQKGKLQ GKEEVRFRGV RRRPWGKYAA EIRDPSKQGS RLWLGTFDTA EEAARAYDRA 60 AFNLRGHLAI LNFPSEYYSQ IRGSPPYPPH LATPSSSSHA SESTSSAAQQ RHVFEIPCLD 120 DKVLEDLLGL SEEHKKKKKG D*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	1e-32	5	123	3	114	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.10G186900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	1e-142	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003535438.1	1e-101	ethylene-responsive transcription factor ERF098
Refseq	XP_028182369.1	1e-101	ethylene-responsive transcription factor ERF098-like
Swissprot	Q9LTC5	6e-48	ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBL	A0A445IPP7	1e-100	A0A445IPP7_GLYSO; Ethylene-responsive transcription factor ERF098
TrEMBL	I1LCB8	1e-100	I1LCB8_SOYBN; Uncharacterized protein
STRING	GLYMA10G33070.1	1e-101	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF270	33	215
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23230.1	2e-38	ERF family protein

Link Out ? help Back to Top
Phytozome	Glyma.10G186900.1.p
Entrez Gene	100793703

Publications ? help Back to Top
Van den Broeck L, et al. From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress. Mol. Syst. Biol., 2017. 13(12): p. 961 [PMID:29269383]