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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.10G173700.1.p | ||||||||
Common Name | GLYMA_10G173700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | Dof | ||||||||
Protein Properties | Length: 337aa MW: 36957.3 Da PI: 9.139 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 124.4 | 3.6e-39 | 44 | 104 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ke+a++cprC+s ntkfCyynnysl+qPryfCk+CrryWt+GG+lrn+PvGgg+rknk+ss Glyma.10G173700.1.p 44 KEQAINCPRCHSINTKFCYYNNYSLTQPRYFCKTCRRYWTEGGTLRNIPVGGGSRKNKRSS 104 7899******************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 6.0E-27 | 36 | 96 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.9E-33 | 46 | 102 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.621 | 48 | 102 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 50 | 86 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 337 aa Download sequence Send to blast |
MQNSQQECKK KEMVVKPIED IVVTNTTCTK AAVGSVERKP RPQKEQAINC PRCHSINTKF 60 CYYNNYSLTQ PRYFCKTCRR YWTEGGTLRN IPVGGGSRKN KRSSASCSNN SHHNDNNSTN 120 KKLSADLVIT PPTLSHTTQN PKSNDNSIIH QGQDLNLAFP STTTTTSDFR KISELVQQNN 180 NNNSSNNSMS ASSSTTTTTT STSHHLSALE LLTGITSSSS TGLSTSFMPI PVPSNPNSIY 240 TCGFPLQDFK PGTLNFSLDG IGKGYTSLQN VHGGRLLFPF EDLKQVSSTT TMNQTQQGDS 300 TGYWTGMLGG GSWFNWSCQL YIARSALKCV MIMIHE* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.28929 | 0.0 | cotyledon| seed coat |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.10G173700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ857269 | 0.0 | DQ857269.1 Glycine max Dof19 mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028182659.1 | 0.0 | dof zinc finger protein DOF4.6-like isoform X1 | ||||
Refseq | XP_028182660.1 | 0.0 | dof zinc finger protein DOF4.6-like isoform X1 | ||||
Refseq | XP_028182661.1 | 0.0 | dof zinc finger protein DOF4.6-like isoform X1 | ||||
Refseq | XP_028182662.1 | 0.0 | dof zinc finger protein DOF4.6-like isoform X1 | ||||
TrEMBL | A0A0R0HUU0 | 0.0 | A0A0R0HUU0_SOYBN; Uncharacterized protein | ||||
TrEMBL | A0A445INU2 | 0.0 | A0A445INU2_GLYSO; Dof zinc finger protein DOF4.6 isoform C | ||||
STRING | GLYMA10G31700.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF674 | 34 | 137 |
Representative plant | OGRP38 | 17 | 445 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G64620.1 | 5e-38 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.10G173700.1.p |