PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G171400.1.p
Common NameGLYMA_10G171400
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family AP2
Protein Properties Length: 576aa    MW: 63705.6 Da    PI: 6.7662
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G171400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.27.2e-12209265155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV++++++gr++A+++d s++   k+ k  + g ++ +e+Aa+a++ a++k++g
  Glyma.10G171400.1.p 209 SIYRGVSRHRWTGRYEAHLWDNSSRRegKTsKGKQ-GGYDKEEKAARAYDLAALKYWG 265
                          57*******************77744566668888.559999**************98 PP
2AP248.22.7e-15309360155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV+++++ grW A+I  +    ++k  +lg+f t eeAa+a++ a+ k++g
  Glyma.10G171400.1.p 309 SIYRGVTRHHQHGRWQARIGRVA---VNKDLYLGTFNTQEEAAEAYDIAAIKFRG 360
                          57****************88742...46************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.0E-8209265IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-13209275IPR016177DNA-binding domain
CDDcd000184.25E-17209275No hitNo description
PROSITE profilePS5103217.135210274IPR001471AP2/ERF domain
SMARTSM003806.6E-19210280IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-11210274IPR001471AP2/ERF domain
PRINTSPR003673.2E-6211222IPR001471AP2/ERF domain
PfamPF008474.5E-10309360IPR001471AP2/ERF domain
SuperFamilySSF541713.2E-17309369IPR016177DNA-binding domain
CDDcd000183.09E-24309368No hitNo description
PROSITE profilePS5103218.795310368IPR001471AP2/ERF domain
SMARTSM003803.6E-32310374IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.3E-18310368IPR001471AP2/ERF domain
PRINTSPR003673.2E-6350370IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 576 aa     Download sequence    Send to blast
MASMNWLDFS LSPQELPSQP LNDEEDHSQT VTPLLGFNSH EISVTECFDL SSFALVEAPN  60
RNNTHHITPL VLNQRDTFFS PFLDYWNTKG LGTSCSSNQN MDNNQQHPKL ENFLLEKPAT  120
GGGGCPKNTN SIGLSMIKTW LRKQMSSQSD AANTSLSMST TRVSESGTVA LPLLTAGEES  180
SSSKSKQSGI LNVDTVSRKS ADTFGKRTSI YRGVSRHRWT GRYEAHLWDN SSRREGKTSK  240
GKQGGYDKEE KAARAYDLAA LKYWGATTTT TNFPIIHYEK ELEEMKNLTR QEYVASLRRK  300
SSGFSRGASI YRGVTRHHQH GRWQARIGRV AVNKDLYLGT FNTQEEAAEA YDIAAIKFRG  360
LKAVTNFDMN RYDVKSILES STLPIGGAAK RLKDADEQVD LTIMDPQTPH VDSNINIFGA  420
SHHSLALHQP QPYSHLNYTY GQKFWIDSAS VDNNNNSSGS NYVIYGGGDG YAIPMATPTF  480
NIADDDDVVQ NSRSNGLEHN DVKMLGYENV LSSSTDPYHA RDLCYLSQPA SGDTVKGSAY  540
DACNTWVPFV IPSTLALRHT NDLCSGASPF TLLHE*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in embryo throughout embryogenesis. Also present in free nuclear endosperm, but disappears once endosperm cellularization begins. {ECO:0000269|PubMed:12172019}.
UniprotTISSUE SPECIFICITY: Mostly expressed in developing seeds. Also expressed in roots, seedlings, and siliques, and, at low levels, in leaves. {ECO:0000269|PubMed:12172019, ECO:0000269|PubMed:15988559}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G171400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014618314.10.0AP2-like ethylene-responsive transcription factor BBM
SwissprotQ6PQQ41e-126BBM_ARATH; AP2-like ethylene-responsive transcription factor BBM
TrEMBLA0A0R0I2K40.0A0A0R0I2K4_SOYBN; Uncharacterized protein
STRINGGLYMA10G31440.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81862840
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.11e-120AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Horstman A,Willemsen V,Boutilier K,Heidstra R
    AINTEGUMENTA-LIKE proteins: hubs in a plethora of networks.
    Trends Plant Sci., 2014. 19(3): p. 146-57
    [PMID:24280109]
  3. Horstman A, et al.
    AIL and HDG proteins act antagonistically to control cell proliferation.
    Development, 2015. 142(3): p. 454-64
    [PMID:25564655]
  4. Florez SL,Erwin RL,Maximova SN,Guiltinan MJ,Curtis WR
    Enhanced somatic embryogenesis in Theobroma cacao using the homologous BABY BOOM transcription factor.
    BMC Plant Biol., 2015. 15: p. 121
    [PMID:25976599]
  5. Lutz KA,Martin C,Khairzada S,Maliga P
    Steroid-inducible BABY BOOM system for development of fertile Arabidopsis thaliana plants after prolonged tissue culture.
    Plant Cell Rep., 2015. 34(10): p. 1849-56
    [PMID:26156330]
  6. Horstman A, et al.
    The BABY BOOM Transcription Factor Activates the LEC1-ABI3-FUS3-LEC2 Network to Induce Somatic Embryogenesis.
    Plant Physiol., 2017. 175(2): p. 848-857
    [PMID:28830937]
  7. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]
  8. Horstman A,Bemer M,Boutilier K
    A transcriptional view on somatic embryogenesis.
    Regeneration (Oxf), 2017. 4(4): p. 201-216
    [PMID:29299323]