PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G170800.5.p
Common NameGLYMA_10G170800, LOC100802536
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 402aa    MW: 43839.4 Da    PI: 8.3299
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G170800.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH40.25.6e-131945127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                         ++++ C++++rtG C++G++C+F+H+p
  Glyma.10G170800.5.p 19 PGEPDCSYYMRTGLCRFGATCRFNHPP 45
                         5789*********************97 PP
2zf-CCCH39.41e-126690327
                         S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                         +++C+++++tGtCk+G++CkF+H++
  Glyma.10G170800.5.p 66 QPECQYYLKTGTCKFGATCKFHHPK 90
                         799********************96 PP
3zf-CCCH38.71.7e-12112136327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                          +++C +++rtG+Ck+G++CkF+H++
  Glyma.10G170800.5.p 112 EPECTYYLRTGQCKFGNTCKFHHPQ 136
                          799********************97 PP
4zf-CCCH391.3e-12262288127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          +++++C+f+++tG Ck+G+ C+F+H++
  Glyma.10G170800.5.p 262 PGQPECQFYMKTGDCKFGAVCRFHHPQ 288
                          5789*********************97 PP
5zf-CCCH38.22.3e-12308334127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          ++++lC f++r+G+Ck+G++CkF H++
  Glyma.10G170800.5.p 308 PGEPLCVFYSRYGICKFGPSCKFDHPM 334
                          589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.9251846IPR000571Zinc finger, CCCH-type
SMARTSM003566.3E-71845IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-102045IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-52346IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-42444IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.146391IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-66390IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-106690IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-66792IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-56990IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.939109137IPR000571Zinc finger, CCCH-type
SMARTSM003566.6E-6109136IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-6112137IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-10112136IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4115135IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.605261289IPR000571Zinc finger, CCCH-type
SMARTSM003565.8E-6261288IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-9263288IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-6265291IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-5267289IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.432307335IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-7307334IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-9309334IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.26E-5310335IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-4312333IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MMNLRTGETM DSGSYPERPG EPDCSYYMRT GLCRFGATCR FNHPPNRKLA IATARMIGEF  60
PERIGQPECQ YYLKTGTCKF GATCKFHHPK DQAGIAGRVA LNILGYPLRP NEPECTYYLR  120
TGQCKFGNTC KFHHPQPSNM MLSLRGSPVY PTVHSPTTPG QQSYAGGTYI PSPRWQGPSS  180
YAPLILPQGV VSVPGWSAYS GQMGSISTSD SPQQAMRNGQ TYGTSRQGEL AGSQGAYSQF  240
RSGTVPVGFY TLQRENIFPE RPGQPECQFY MKTGDCKFGA VCRFHHPQER LVPAPNCVLS  300
PIGLPLRPGE PLCVFYSRYG ICKFGPSCKF DHPMEIFSHN ISASPSADAP SRHLLGSSSG  360
TAALNLSSEG LVESSSAKPR RLSLSETRQI PSGDDDIDDD G*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.432120.0cotyledon| epicotyl| flower| hypocotyl| leaf| meristem| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G170800.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1468021e-172BT146802.1 Lotus japonicus clone JCVI-FLLj-23L7 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003536159.10.0zinc finger CCCH domain-containing protein ZFN-like isoform X1
RefseqXP_028182771.10.0zinc finger CCCH domain-containing protein ZFN-like isoform X1
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A445INP40.0A0A445INP4_GLYSO; Zinc finger CCCH domain-containing protein ZFN-like isoform A
TrEMBLI1LBV80.0I1LBV8_SOYBN; Uncharacterized protein
TrEMBLI1LBV90.0I1LBV9_SOYBN; Uncharacterized protein
STRINGGLYMA10G31370.60.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-171zinc finger protein 1