PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G165900.1.p
Common NameGLYMA_10G165900, LOC100790369
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 963aa    MW: 108447 Da    PI: 5.0111
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G165900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.19.6e-14853248
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         g W   Ede+l+ av ++G+++W++I++ +  ++++kqck rw+ +l
  Glyma.10G165900.1.p  8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53
                         78*****************************.************986 PP
2Myb_DNA-binding32.81.6e-1060103248
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            WT eEde+l+++ k++++  W+tIa  +g  Rt+ qc +r+ k+l
  Glyma.10G165900.1.p  60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103
                          68*****************99.********8..**********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.008257IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.6E-18556IPR009057Homeodomain-like
SMARTSM007177.0E-15655IPR001005SANT/Myb domain
CDDcd001675.90E-121053No hitNo description
PfamPF139214.6E-131070No hitNo description
SuperFamilySSF466896.11E-2133107IPR009057Homeodomain-like
CDDcd116591.93E-3055106No hitNo description
Gene3DG3DSA:1.10.10.603.9E-1457104IPR009057Homeodomain-like
SMARTSM007175.2E-1258105IPR001005SANT/Myb domain
PROSITE profilePS5129415.80358107IPR017930Myb domain
PfamPF118317.3E-62406654IPR021786Pre-mRNA splicing factor component Cdc5p/Cef1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 963 aa     Download sequence    Send to blast
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT  60
EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDVACVKD ENYEPGDDPR  120
KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TKGKKAKRKA REKQLEEARR  180
LASLQKKREL KAAGIDIRQR KRKRKGIDYN AEIPFEKRPP PGFFDVTDED RPVEQPQFPT  240
TIEELEGKRR VDVEAQLRKQ DIAKNKIAQR QDAPSAILHA NKLNDPETVR KRSKLMLPPP  300
QISDQELDDI AKLGYASDLA GSQELAEGSR ATQALLTNYA QTPGQGMTPL RTPQRTPAGK  360
GDAIMMEAEN LARLRESQTP LLGGENPELH PSDFSGVTPK KKEIQTPNPM LTPSATPGAA  420
GLTPRIGMTP TRDGFSFSMT PKGTPLRDEL HINEDMNMHD STKLELQRQA DMRRSLRSGL  480
GSLPQPKNEY QIVMPPVLED AEEPEEKIEE DMSDRIAREK AEEEARQQAL LRKRSKVLQR  540
ELPRPPTASL ELIRNSLMRT DGDKSSFVPP TSIEQADEMI RRELLTLLEH DNGKYPLDDK  600
VIKEKKKGAK RAVNGSAVPV IEDFQEDEMK EADKLIKEEA LYLCAAMGHE DEPLDEFIEA  660
HRTCLNDLMY FPTRNAYGLS SVAGNMEKLA ALQNEFENVR NKLDDGKEKM VRLEKKVMVL  720
TQGYEMRVKK SLWPQIEATF KQMDVAATEL ECFKALQKQE QLAASHRINN LWGEVQKQKE  780
LEKTLQNRYG SLIEELEKMQ NVMDQCRLLA QQQEEIEANN HARESTEIIE SKAGETDVQS  840
TENCETVPDS VEHGHALAVE SSDDGTADQQ VDIVHDQATS SVSHDMDVDS DKLANPTPAA  900
ENVDGKLEVT ATASYTDDGK TMLEMGAAVE VSSSPNHDVV ADAVNSHDNS MEETNAVGEE  960
TN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5mqf_L0.028013800Cell division cycle 5-like protein
5xjc_L0.028013800Cell division cycle 5-like protein
5yzg_L0.028013800Cell division cycle 5-like protein
5z56_L0.028013800Cell division cycle 5-like protein
5z57_L0.028013800Cell division cycle 5-like protein
5z58_L0.028013800Cell division cycle 5-like protein
6ff4_L0.028013800Cell division cycle 5-like protein
6ff7_L0.028013800Cell division cycle 5-like protein
6icz_L0.028013800Cell division cycle 5-like protein
6id0_L0.028013800Cell division cycle 5-like protein
6id1_L0.028013800Cell division cycle 5-like protein
6qdv_O0.028013800Cell division cycle 5-like protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1185204KKRELKAAGIDIRQRKRKRK
2199204RKRKRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.232780.0root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed extensively in shoot and root meristems. {ECO:0000269|PubMed:8917598}.
Functional Description ? help Back to Top
Source Description
UniProtComponent of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G165900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003536137.10.0cell division cycle 5-like protein isoform X2
RefseqXP_006589207.10.0cell division cycle 5-like protein isoform X2
RefseqXP_028182163.10.0cell division cycle 5-like protein isoform X2
RefseqXP_028182164.10.0cell division cycle 5-like protein isoform X2
SwissprotP929480.0CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBLA0A445INF50.0A0A445INF5_GLYSO; Cell division cycle 5-like protein isoform B
TrEMBLI1LBQ20.0I1LBQ2_SOYBN; Uncharacterized protein
STRINGGLYMA10G30870.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40723354
Representative plantOGRP39481723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09770.10.0cell division cycle 5
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Li S, et al.
    MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis.
    Plant Cell, 2018. 30(2): p. 481-494
    [PMID:29437988]