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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.10G156600.1.p | ||||||||
Common Name | GLYMA_10G156600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 333aa MW: 36924.3 Da PI: 5.2857 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.6 | 1.9e-12 | 132 | 183 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h +Er+RR+++N+ ++ Lr+l+P + + ++ + a+i Av+++k+L+ Glyma.10G156600.1.p 132 QRMTHIVVERNRRKQMNEYLSVLRSLMPDS---YIQRGDQASIIGGAVNFVKELE 183 79****************************...9******************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 7.58E-13 | 130 | 187 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.1E-13 | 130 | 187 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.83E-15 | 131 | 194 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.243 | 131 | 182 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.8E-9 | 132 | 183 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.0E-9 | 137 | 188 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 333 aa Download sequence Send to blast |
MCLPEGERDR ERAMALEAVV FPQSQDPFGS GYGSVNTKDF YNYTLLAATY EQQHINKEEE 60 QGGASISTFQ PETSNYPYGD WTTSSSSSML PHLNNELQET TTTTSNTLDS LNTRPKRRRA 120 KSRKNKEEIE NQRMTHIVVE RNRRKQMNEY LSVLRSLMPD SYIQRGDQAS IIGGAVNFVK 180 ELEQRLHFLG AQKEGEGKSD DGGATNMPFS EFFTFPQYST GGGGGSDNSA AIGEDVSEVK 240 CGIADIEVTM VESHANLKIR SKKCPKQLLK LVSGLHTVRL TILHLNVTTT GEVVLYSLSV 300 KVEDDCKLGS VDDIAAAVYQ MLDRIQQEAM LN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 132 | 143 | RMTHIVVERNRR |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.10G156600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT093468 | 0.0 | BT093468.1 Soybean clone JCVI-FLGm-14K7 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028183377.1 | 0.0 | transcription factor bHLH94-like | ||||
Swissprot | Q9C7T4 | 3e-78 | BH096_ARATH; Transcription factor bHLH96 | ||||
TrEMBL | I1LBE5 | 0.0 | I1LBE5_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA10G29760.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF718 | 34 | 135 |
Representative plant | OGRP253 | 15 | 131 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72210.1 | 5e-79 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.10G156600.1.p |
Publications ? help Back to Top | |||
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