PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G147000.3.p
Common NameGLYMA_10G147000, LOC100786114
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TALE
Protein Properties Length: 225aa    MW: 25765.1 Da    PI: 4.7921
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G147000.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox31.14.1e-101672002255
                          SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
             Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                           +yp++ee+ +L++ +gL+++q+ +WF N+R ++
  Glyma.10G147000.3.p 167 WPYPTEEEKVQLSEMTGLDQKQINNWFINQRKRH 200
                          69*****************************885 PP
2ELK37.16.6e-13120141122
                  ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                          ELK++LlrKY+gyL+sLk+EF+
  Glyma.10G147000.3.p 120 ELKEMLLRKYGGYLSSLKKEFL 141
                          9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012562.2E-252475IPR005541KNOX2
PfamPF037915.9E-242774IPR005541KNOX2
PfamPF037896.9E-10120141IPR005539ELK domain
PROSITE profilePS5121311.174120140IPR005539ELK domain
SMARTSM011888.8E-7120141IPR005539ELK domain
PROSITE profilePS5007112.746140203IPR001356Homeobox domain
SMARTSM003897.3E-14142207IPR001356Homeobox domain
SuperFamilySSF466891.58E-20142216IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.5E-28145205IPR009057Homeodomain-like
CDDcd000863.21E-13152204No hitNo description
PfamPF059201.6E-17160199IPR008422Homeobox KN domain
PROSITE patternPS000270178201IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MVGAPPELAS LLEEIARESY PTDALREIGD DPELDEFMES YCEVLHRYKQ ELSKPFNEAT  60
LFLCSIESQL SNLCKGTLTM PLDNNHSDEA AGTSEDELSW EKVEAVEGHE SSGPRPGDQE  120
LKEMLLRKYG GYLSSLKKEF LKKRKKGKLP KDARMVLMDW WNTHYRWPYP TEEEKVQLSE  180
MTGLDQKQIN NWFINQRKRH WKPSEDMRFA IMDGVSGSGF GGPI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135144LKKEFLKKRK
2141145KKRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.617480.0stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Highly expressed in the early globular stage embryo before 2 days after pollination (DAP), but not in the endosperm. At 3 and 4 DAP, expression is restricted to the region around or just below the center of the ventral side of the embryo, where the shoot apex subsequently arises. During the transition to the shoot apex differentiation stage, expression is divided between the upper and basal regions of the shoot area, and the notch between the first leaf primordium and epiblast, respectively. When the first leaf primordia is evident, expression is localized to the notches between the shoot apical meristem (SAM) and the first leaf primordium and the putative second leaf primordium. Expressed uniformly in the inflorescence meristem, but after the transition from inflorescence to the floral phase, located specifically in the notches between the floral meristem and glume primordia. At later stages of flower development, uniformly expressed throughout the corpus of the meristem, and in the notches between glume primordia, but less well defined than in the previous stage. {ECO:0000269|PubMed:10488233}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269|PubMed:10488233}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G147000.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003536044.11e-166homeobox protein knotted-1-like 10 isoform X1
RefseqXP_006589119.11e-167homeobox protein knotted-1-like 10 isoform X2
RefseqXP_028183426.11e-166homeobox protein knotted-1-like 10 isoform X1
RefseqXP_028183427.11e-167homeobox protein knotted-1-like 10 isoform X2
SwissprotQ9FP298e-83KNOS1_ORYSJ; Homeobox protein knotted-1-like 1
TrEMBLA0A0R0HT811e-166A0A0R0HT81_SOYBN; Uncharacterized protein
TrEMBLA0A445IMI61e-165A0A445IMI6_GLYSO; Homeobox protein knotted-1-like 1 isoform A
TrEMBLA0A445IMN01e-166A0A445IMN0_GLYSO; Homeobox protein knotted-1-like 1 isoform B
TrEMBLK7LJG71e-165K7LJG7_SOYBN; Uncharacterized protein
STRINGGLYMA10G28820.21e-165(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.23e-71KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Park SH, et al.
    A Ds-insertion mutant of OSH6 (Oryza sativa Homeobox 6) exhibits outgrowth of vestigial leaf-like structures, bracts, in rice.
    Planta, 2007. 227(1): p. 1-12
    [PMID:17624547]