PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.10G147000.1.p

Common Name

GLYMA_10G147000, LOC100786114

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

TALE

Protein Properties

Length: 297aa MW: 33654 Da PI: 4.7998

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.10G147000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	30.3	7e-10	239	272	22	55
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 +yp++ee+ +L++ +gL+++q+ +WF N+R ++ Glyma.10G147000.1.p 239 WPYPTEEEKVQLSEMTGLDQKQINNWFINQRKRH 272 59*****************************885 PP
2	ELK	36.6	9.5e-13	192	213	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK++LlrKY+gyL+sLk+EF+ Glyma.10G147000.1.p 192 ELKEMLLRKYGGYLSSLKKEFL 213 9********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01255	1.2E-19	49	93	IPR005540	KNOX1
Pfam	PF03790	4.8E-20	51	91	IPR005540	KNOX1
SMART	SM01256	2.2E-25	96	147	IPR005541	KNOX2
Pfam	PF03791	9.2E-24	99	146	IPR005541	KNOX2
Pfam	PF03789	9.9E-10	192	213	IPR005539	ELK domain
PROSITE profile	PS51213	11.174	192	212	IPR005539	ELK domain
SMART	SM01188	8.8E-7	192	213	IPR005539	ELK domain
PROSITE profile	PS50071	12.746	212	275	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.69E-20	214	288	IPR009057	Homeodomain-like
SMART	SM00389	7.3E-14	214	279	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.2E-27	217	277	IPR009057	Homeodomain-like
CDD	cd00086	3.34E-13	224	276	No hit	No description
Pfam	PF05920	2.4E-17	232	271	IPR008422	Homeobox KN domain
PROSITE pattern	PS00027	0	250	273	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MEDIYKMNPL LSCSGGDVVR EVNVNSATGA SELNLGLVAN NFFSDISDRF IKSQIATHPL 60 YPNLVSAYIE CRKVGAPPEL ASLLEEIARE SYPTDALREI GDDPELDEFM ESYCEVLHRY 120 KQELSKPFNE ATLFLCSIES QLSNLCKGTL TMPLDNNHSD EAAGTSEDEL SWEKVEAVEG 180 HESSGPRPGD QELKEMLLRK YGGYLSSLKK EFLKKRKKGK LPKDARMVLM DWWNTHYRWP 240 YPTEEEKVQL SEMTGLDQKQ INNWFINQRK RHWKPSEDMR FAIMDGVSGS GFGGPI*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	207	216	LKKEFLKKRK
2	213	217	KKRKK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.61748	0.0	stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Highly expressed in the early globular stage embryo before 2 days after pollination (DAP), but not in the endosperm. At 3 and 4 DAP, expression is restricted to the region around or just below the center of the ventral side of the embryo, where the shoot apex subsequently arises. During the transition to the shoot apex differentiation stage, expression is divided between the upper and basal regions of the shoot area, and the notch between the first leaf primordium and epiblast, respectively. When the first leaf primordia is evident, expression is localized to the notches between the shoot apical meristem (SAM) and the first leaf primordium and the putative second leaf primordium. Expressed uniformly in the inflorescence meristem, but after the transition from inflorescence to the floral phase, located specifically in the notches between the floral meristem and glume primordia. At later stages of flower development, uniformly expressed throughout the corpus of the meristem, and in the notches between glume primordia, but less well defined than in the previous stage. {ECO:0000269\|PubMed:10488233}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269\|PubMed:10488233}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.10G147000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT094097	0.0	BT094097.1 Soybean clone JCVI-FLGm-18M11 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003536044.1	0.0	homeobox protein knotted-1-like 10 isoform X1
Refseq	XP_028183426.1	0.0	homeobox protein knotted-1-like 10 isoform X1
Swissprot	Q9FP29	2e-98	KNOS1_ORYSJ; Homeobox protein knotted-1-like 1
TrEMBL	A0A445IMI6	0.0	A0A445IMI6_GLYSO; Homeobox protein knotted-1-like 1 isoform A
TrEMBL	K7LJG7	0.0	K7LJG7_SOYBN; Uncharacterized protein
STRING	GLYMA10G28820.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF620	34	125
Representative plant	OGRP167	17	148

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23380.1	8e-84	KNOTTED1-like homeobox gene 6

Link Out ? help Back to Top
Phytozome	Glyma.10G147000.1.p
Entrez Gene	100786114

Publications ? help Back to Top
Park SH, et al. A Ds-insertion mutant of OSH6 (Oryza sativa Homeobox 6) exhibits outgrowth of vestigial leaf-like structures, bracts, in rice. Planta, 2007. 227(1): p. 1-12 [PMID:17624547]