PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G142600.4.p
Common NameGLYMA_10G142600
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 591aa    MW: 62875.1 Da    PI: 6.7169
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G142600.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.34.2e-16364410455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           hn  Er+RRdriN+++  L+el+P++      K++Ka++L +A+eY+k Lq
  Glyma.10G142600.4.p 364 VHNLSERKRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 410
                          6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.08E-17356414No hitNo description
SuperFamilySSF474591.83E-20357420IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.9E-20357418IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.216360409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-13364410IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-17366415IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 591 aa     Download sequence    Send to blast
MSVPSSEVDF CQDEDVLPWL DYPSIDGSLQ QEYGSDFLPA SNSFTLLDKK SNGNMAFRDS  60
QKTSEEQGNV FKGSSAGQVE TARPKASSTS QLFPPSLHQC QTSFVSSRSR ASDITENNNT  120
SNANQDASYG KITHILSSSS DFSNAKVQKC DPPMNSNGSS STIMNFSHFA RPAAMVRANL  180
HSIGLKSGLS SSRSDSMEMK NKGAAATSSN PPESILVDSS VECLKEPIIQ CQQVVEQSKA  240
DVNSLLPKSV EQNAVPSKQS EPAGKESAAK IDLIPNQVPG DNGTKGQTAA EKSKEPAVAS  300
SSVCSGNGTD QGSEEPNQNL KRKRKDTDDS ECHSEDVEEE SAGAKKTAGG RGGAGSKRSR  360
AAEVHNLSER KRRDRINEKM RALQELIPNC NKVDKASMLD EAIEYLKTLQ LQVQIMSMGA  420
GLYMPPMMLP AGMQHMHAPH MAPFSPMGVG MHMGYGMGYG MGMPDMNGGS SRFPMIQVPQ  480
MQGTHIPVAH MSGSTAFHGM ARANPPGFGL PGQGHPMPMP RAPMFPFSGG QMPNVDPQVK  540
QSTGGRDSTS QMPTQCEAAA VGFEQSTLAH NNGHATKAND NGSVNPGPGR *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1368373ERKRRD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.180330.0cotyledon| epicotyl| hypocotyl| leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G142600.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311310.0KT031131.1 Glycine max clone HN_WYQ_57 bHLH transcription factor (Glyma10g28290.3) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006589101.10.0transcription factor PIF3
RefseqXP_014618650.10.0transcription factor PIF3
TrEMBLI1LAY60.0I1LAY6_SOYBN; Uncharacterized protein
STRINGGLYMA10G28290.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.25e-48phytochrome interacting factor 3