PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

MYB

Protein Properties

Length: 430aa MW: 48312.8 Da PI: 7.2062

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.10G142200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.1	8.5e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l++ ++++G g+W+++++ g+ R++k+c++rw +yl Glyma.10G142200.1.p 14 KGLWSPEEDEKLLNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61 678*******************************************97 PP
2	Myb_DNA-binding	43.6	6.9e-14	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E+ +v++++ lG++ W+ Ia+ ++ gRt++++k+ w++ Glyma.10G142200.1.p 67 RGAFSQQEENMIVELHAVLGNR-WSQIAAQLP-GRTDNEIKNLWNS 110 89******************.*****.*********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.3E-27	6	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	24.857	9	65	IPR017930	Myb domain
SuperFamily	SSF46689	4.87E-29	12	108	IPR009057	Homeodomain-like
SMART	SM00717	5.2E-13	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	1.7E-15	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	8.51E-12	17	61	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.7E-25	65	116	IPR009057	Homeodomain-like
PROSITE profile	PS51294	19.85	66	116	IPR017930	Myb domain
SMART	SM00717	3.5E-12	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	1.5E-12	67	111	IPR001005	SANT/Myb domain
CDD	cd00167	1.69E-8	69	109	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001944	Biological Process	vasculature development
GO:0009733	Biological Process	response to auxin
GO:0010089	Biological Process	xylem development
GO:0010119	Biological Process	regulation of stomatal movement
GO:0010214	Biological Process	seed coat development
GO:0048364	Biological Process	root development
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence Send to blast
MGRHSCCYKQ KLRKGLWSPE EDEKLLNHIT KHGHGCWSSV PKLAGLQRCG KSCRLRWINY 60 LRPDLKRGAF SQQEENMIVE LHAVLGNRWS QIAAQLPGRT DNEIKNLWNS CLKKKLRQRG 120 IDPTTHKPLS EVENDKDMNM MPPSTDKSTQ KASVGSNEVV SNLVDHHQPP KTMPNSSSER 180 YPLEVSTTSS TQELFLDRFG TTTTTCHENN NNTSDLVGSY FSFQHLNYGT TTSMALSSNP 240 NTSLCFILPS TSSDINNNNS IITSSSMLPS IFPTQHVKLQ SNNNNPSSIS SDGVQNWETS 300 NNTNKNNGNM QLQSSTNYLD STWGVAESMK IVNINKEAQV VPLQAEQEDL KWSEYLNTPF 360 ILGNNTTQNH QIQTSQSIYT EVIKPETGFI IDESCTSNWH HHQPPPAFQL SDIYSKDLQR 420 FSVTFGQTL*

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence Send to blast

MGRHSCCYKQ KLRKGLWSPE EDEKLLNHIT KHGHGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGAF SQQEENMIVE LHAVLGNRWS QIAAQLPGRT DNEIKNLWNS CLKKKLRQRG  120
IDPTTHKPLS EVENDKDMNM MPPSTDKSTQ KASVGSNEVV SNLVDHHQPP KTMPNSSSER  180
YPLEVSTTSS TQELFLDRFG TTTTTCHENN NNTSDLVGSY FSFQHLNYGT TTSMALSSNP  240
NTSLCFILPS TSSDINNNNS IITSSSMLPS IFPTQHVKLQ SNNNNPSSIS SDGVQNWETS  300
NNTNKNNGNM QLQSSTNYLD STWGVAESMK IVNINKEAQV VPLQAEQEDL KWSEYLNTPF  360
ILGNNTTQNH QIQTSQSIYT EVIKPETGFI IDESCTSNWH HHQPPPAFQL SDIYSKDLQR  420
FSVTFGQTL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	4e-27	12	116	5	108	B-MYB
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	111	117	LKKKLRQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.59580	0.0	root\| seed coat

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00134	DAP	Transfer from AT1G09540	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.10G142200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT031195	0.0	KT031195.1 Glycine max clone HN_CCL_35 MYB/HD-like transcription factor (Glyma10g28250.1) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003535308.1	0.0	transcription factor MYB61
TrEMBL	I1LAY2	0.0	I1LAY2_SOYBN; MYB/HD-like transcription factor
STRING	GLYMA10G28250.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1083	33	103
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09540.1	8e-95	myb domain protein 61

Link Out ? help Back to Top
Phytozome	Glyma.10G142200.1.p
Entrez Gene	100790184

Publications ? help Back to Top
Chai C, et al. Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance. BMC Genomics, 2015. 16: p. 596 [PMID:26268547]