PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G138800.3.p
Common NameGLYMA_10G138800, LOC100818543
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 395aa    MW: 43287.7 Da    PI: 8.2337
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G138800.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH469.2e-15207252454
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           hn  Er+RRd+iN+++  L+el+P++      K +Ka++L  A+eY+k L
  Glyma.10G138800.3.p 207 VHNLCERKRRDKINKRMRILKELIPNC-----NKTDKASMLDDAIEYLKTL 252
                          5*************************8.....6****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.22E-19201264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.111203252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.06E-16206257No hitNo description
Gene3DG3DSA:4.10.280.102.1E-18207261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-12207252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.7E-16209258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0010017Biological Processred or far-red light signaling pathway
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MTPSCEGSFN AKSARLSSLY SLMDFPVQRD SALDNSQPNS HQSNDQNSGK FAKAANSSSK  60
GLDRSLVINS PKGSPGRQKN PLNSDTSNMV PRSEETTPPD EQSEAVGHDS IHGSRGQYFN  120
QTSSSARHRA KGKAHDTKQK YCDEGLLESS SLCSIGASNN RNVCSRTHDD IDDSTYLSNN  180
DEEPEDVVKE KPAWEGTGVK RSRNAEVHNL CERKRRDKIN KRMRILKELI PNCNKTDKAS  240
MLDDAIEYLK TLKLQLQMMS MGAGFCMPFM MLPNAAHHMM NTPHLHQLMG LGMGFRPGTA  300
MPCSLPQFPI TPLHGITDNR VHMFGFPNQV PPMPISHAPF IPMLGNPSTQ PTPLATSTNI  360
NLAENPASSQ LTTLMASSPK NLFISGQAEY ATKQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1211216ERKRRD
2212217RKRRDK
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G138800.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0958540.0BT095854.1 Soybean clone JCVI-FLGm-15A10 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006589091.10.0transcription factor PIL1 isoform X1
RefseqXP_006589092.10.0transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15 isoform X2
RefseqXP_006589093.10.0transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15 isoform X2
RefseqXP_006589094.10.0transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15 isoform X2
TrEMBLK7LJB00.0K7LJB0_SOYBN; Uncharacterized protein
TrEMBLK7LJB10.0K7LJB1_SOYBN; Uncharacterized protein
STRINGGLYMA10G27910.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46970.12e-38phytochrome interacting factor 3-like 1